PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2636s0024.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 324aa MW: 35949.6 Da PI: 6.2435

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2636s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.6e-10	191	234	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L + Cagra.2636s0024.1.p 191 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 234 8999********************************98877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-13	187	251	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.622	189	241	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-13	191	242	No hit	No description
SuperFamily	SSF57959	3.94E-11	191	245	No hit	No description
Pfam	PF00170	3.0E-9	191	234	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.45E-23	192	242	No hit	No description
PROSITE pattern	PS00036	0	194	209	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAQLPPKIPN MTPHWPDFSS QKLSPFSTPT ATVAAATTTA VQNPSWVDEF LDFSASRRGN 60 HRRSISDSIA FLEAPTVSDH VSIENIHFDR FDDEQFMSMF TDDGDLQNNT SHINNILGTT 120 GSSSNTSTPS NSINDDNKEP PSIYHDMNNT NNNCNNNNDE VQSQCKTEPD DGSASNNNSG 180 DSSGNRILDP KRVKRILANR QSAQRSRVRK LQYISELERS VTSLQAEVSV LSPRVAFLDH 240 QRLLLNVDNS ALKQRIAALS QDKIFKDAHQ ESLKREIERL RQVYNQQSLT KMDNANHSPA 300 TGAVAASAVE IKKSIEKEQL LNV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2636s0024.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294608.1	0.0	basic leucine zipper 34
Swissprot	F4IN23	1e-170	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	R0FXS2	0.0	R0FXS2_9BRAS; Uncharacterized protein
STRING	Cagra.2636s0024.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	1e-149	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cagra.2636s0024.1.p

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]