PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2519s0054.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 205aa    MW: 23789.7 Da    PI: 6.9223
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2519s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.71.4e-1468128363
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e +r+rr+ +NRe+ArrsR RKk++ieeL++ v++L   N+ L +++ +l +   ++ +e+
  Cagra.2519s0054.1.p  68 EERRARRMVSNRESARRSRMRKKKQIEELQQQVEQLMMLNHHLSEKVINLLESNHQVLQEN 128
                          678********************************************99999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.8E-1566130IPR004827Basic-leucine zipper domain
PfamPF001701.1E-1268128IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.368131IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.3E-1270126No hitNo description
SuperFamilySSF579593.44E-1170121No hitNo description
CDDcd147022.67E-1771122No hitNo description
PROSITE patternPS0003607388IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEPGVHRSHC FDILDGVPPQ DDHFNSAFLS NTDFSVQLQS VSTRSNNHQS QLDPNALNIF  60
HHEALAPEER RARRMVSNRE SARRSRMRKK KQIEELQQQV EQLMMLNHHL SEKVINLLES  120
NHQVLQENSQ LKEKVSSFHL LMADVLLPMR NAESNINDRN VNLLRGETSN RPTNSPFASS  180
TMIDPYMFDF YTAITYLHLY IDYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2519s0054.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154720.0AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281849.21e-139LOW QUALITY PROTEIN: basic leucine zipper 43
TrEMBLR0EZJ91e-148R0EZJ9_9BRAS; Uncharacterized protein
STRINGCagra.2519s0054.1.p1e-149(Capsella grandiflora)
STRINGXP_006281849.11e-149(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.12e-88basic leucine-zipper 70