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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2519s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 177aa MW: 19761.7 Da PI: 10.2428 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.2 | 7.4e-32 | 3 | 58 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v Y+eClkNhA+slGgha+DGCgEf+p++++ +++ +l+C ACgCHRnFHRr+++ Cagra.2519s0020.1.p 3 VLYNECLKNHAVSLGGHALDGCGEFIPKSTTIlTDPPSLRCDACGCHRNFHRRSSS 58 89**************************99999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-33 | 1 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.0E-26 | 3 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.433 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.6E-32 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.55E-17 | 90 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 90 | 156 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.3E-30 | 99 | 156 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MVVLYNECLK NHAVSLGGHA LDGCGEFIPK STTILTDPPS LRCDACGCHR NFHRRSSSEV 60 FSHHRSPPLK PLASTPHLLL SLSSGFSGPG DKDRSAVMKK RKRTKFTAEQ KEKMRGFAER 120 AGWKMNGWDE KWVKEFCGEV GIEKQVLKVW IHNNKYLSNV KNRDSTSSTS SMSLKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-19 | 100 | 155 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 103 | KKRKRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2519s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB011483 | 2e-76 | AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9. | |||
GenBank | CP002688 | 2e-76 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282138.1 | 1e-114 | zinc-finger homeodomain protein 12 | ||||
Swissprot | Q9FKJ9 | 1e-100 | ZHD12_ARATH; Zinc-finger homeodomain protein 12 | ||||
TrEMBL | R0F1A8 | 1e-112 | R0F1A8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2519s0020.1.p | 1e-129 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 7e-90 | homeobox protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2519s0020.1.p |