PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2374s0036.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 348aa    MW: 39363.4 Da    PI: 9.7963
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2374s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.5e-32266324159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  Cagra.2374s0036.1.p 266 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHS 324
                          59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-33251324IPR003657WRKY domain
SuperFamilySSF1182903.66E-28259325IPR003657WRKY domain
PROSITE profilePS5081129.344261326IPR003657WRKY domain
SMARTSM007749.9E-37266325IPR003657WRKY domain
PfamPF031065.1E-25267323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDGLDRLYSQ PKKIKQNINR NHNQNFLSHT HTHNLKFVSL LRKKRTTEMG TINQGVSFFD  60
ESQTIINPNN SNHLGFFFSF PSHTLSSSSS TSSSSPSSLV SPFLGHHSLN SFLHNNPSSF  120
VSHPQDPINL MTNLPQSLIS SLSTSKQRDD HDGFLDLDHH RLTGSRSSQR PSPNPWAWSS  180
QAGYGCSQKN NHGSGIDIDD NDDEVGDGGG GTNDDDQHNT ARRHEKHNTA SLGGVVSSLK  240
MKKLKTRRKV REPRFCFKTL SEVDVLDDGY RWRKYGQKVV KNTQHPRSYY RCTQDKCRVK  300
KRVERLADDP RMVITTYEGR HLHSPSNHLD DDSLSSSHHS PLSNFFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-25258323974Probable WRKY transcription factor 4
2lex_A8e-25258323974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2374s0036.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211530.0AF421153.1 Arabidopsis thaliana WRKY transcription factor 13 (WRKY13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284053.21e-172probable WRKY transcription factor 13
SwissprotQ9SVB71e-167WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLR0F6410.0R0F641_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.2374s0036.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-116WRKY DNA-binding protein 13