PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cagra.2350s0071.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 971aa MW: 108336 Da PI: 6.332

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2350s0071.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	647	697	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Cagra.2350s0071.1.p 647 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 697 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	636	717	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	650	697	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.05E-24	859	955	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-25	867	951	No hit	No description
SMART	SM00666	3.3E-29	869	952	IPR000270	PB1 domain
PROSITE profile	PS51745	30.213	869	952	IPR000270	PB1 domain
Pfam	PF00564	5.0E-19	871	951	IPR000270	PB1 domain
CDD	cd06407	9.78E-42	871	951	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MEGGGGDGTF LPNSSFGAFS ETAMDMDFME ELFYDGCWLE TTDGKSLKQT MGQQVSDSTT 60 MNDNNNSFLY GYQFAGNTSQ DHISNEETGK KFPPIAPGFL KIEDLSNQPM NQAPFDQSAA 120 MSSAQAEKFL LEETERGRRY WIAPRTSQGP SSSVKDRLVQ AIKGLDEAVQ DKDFLIQIWV 180 PIQQEGKNFL TTLEQPHFFN PKYSSLKRYR DVSVAYNFPA DEDSTESVGL PGRVFLRKLP 240 EWTPDVRFFR SEEYPRIKEA EKCDVRGSLA LPVFERGSGT CLGVVEIVTT TQKMNYRPEL 300 DNICKALESV NLRSSRNLKS PSREFLQVYN EFYYAALPEV SEFLTWVCRL YDLPLALTWA 360 PCARQGKVGS RHSDENFSEC VSTVDDACIV PDHQSRNFLE ACSEHHLLQG EGIVGKAFKA 420 TKLFFVPEVI TFSKTNYPLA HHAKISGLHA ALAVPLKSKF NGSVEFVLEF FFPKTCLHTE 480 AQQDMLKSLS VTLQQDFRSL NLVIDKELEL EVVFPVREEV VFAETPLINA QTGENMKPLP 540 LEEISQEDSS WISHMIKANE KGKGVSLSWE YQKEEPKEEF MLTSGWDNNQ IGSGHNNFLS 600 EAEQFQKVSN SGLRIDMDPS FESASFGAGQ TLLGSRRPGE KRRTKTEKTI GLEVLRQYFA 660 GSLKDAAKSI GVCPTTLKRI CRQHGITRWP SRKIKKVGHS LKKLQLVIDS VQGVQGSIQL 720 DSFYTSFPEL SSPHMSGTGT SFKNTDQSRN LTAQTENGVS AQVTTAAPRS PPSSSCSHSS 780 GSSTCCSTGA NQSTNTGNTS NTVTTLMAEN ASAILKRARS EVRLHTMNQE ETKSLSRTLS 840 HKTFSEHPLF ENLPRLPENS TRKLKAEGAS KVKATFGEAK VRFTLRPTWG FRELQHEIAR 900 RFNIDNIAPF DLKYLDDDKE WVLLTCEADL EECIDIYRSS QSRTIKISVH EASQGKMGGS 960 FGSIALGPSL *

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MEGGGGDGTF LPNSSFGAFS ETAMDMDFME ELFYDGCWLE TTDGKSLKQT MGQQVSDSTT  60
MNDNNNSFLY GYQFAGNTSQ DHISNEETGK KFPPIAPGFL KIEDLSNQPM NQAPFDQSAA  120
MSSAQAEKFL LEETERGRRY WIAPRTSQGP SSSVKDRLVQ AIKGLDEAVQ DKDFLIQIWV  180
PIQQEGKNFL TTLEQPHFFN PKYSSLKRYR DVSVAYNFPA DEDSTESVGL PGRVFLRKLP  240
EWTPDVRFFR SEEYPRIKEA EKCDVRGSLA LPVFERGSGT CLGVVEIVTT TQKMNYRPEL  300
DNICKALESV NLRSSRNLKS PSREFLQVYN EFYYAALPEV SEFLTWVCRL YDLPLALTWA  360
PCARQGKVGS RHSDENFSEC VSTVDDACIV PDHQSRNFLE ACSEHHLLQG EGIVGKAFKA  420
TKLFFVPEVI TFSKTNYPLA HHAKISGLHA ALAVPLKSKF NGSVEFVLEF FFPKTCLHTE  480
AQQDMLKSLS VTLQQDFRSL NLVIDKELEL EVVFPVREEV VFAETPLINA QTGENMKPLP  540
LEEISQEDSS WISHMIKANE KGKGVSLSWE YQKEEPKEEF MLTSGWDNNQ IGSGHNNFLS  600
EAEQFQKVSN SGLRIDMDPS FESASFGAGQ TLLGSRRPGE KRRTKTEKTI GLEVLRQYFA  660
GSLKDAAKSI GVCPTTLKRI CRQHGITRWP SRKIKKVGHS LKKLQLVIDS VQGVQGSIQL  720
DSFYTSFPEL SSPHMSGTGT SFKNTDQSRN LTAQTENGVS AQVTTAAPRS PPSSSCSHSS  780
GSSTCCSTGA NQSTNTGNTS NTVTTLMAEN ASAILKRARS EVRLHTMNQE ETKSLSRTLS  840
HKTFSEHPLF ENLPRLPENS TRKLKAEGAS KVKATFGEAK VRFTLRPTWG FRELQHEIAR  900
RFNIDNIAPF DLKYLDDDKE WVLLTCEADL EECIDIYRSS QSRTIKISVH EASQGKMGGS  960
FGSIALGPSL *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2350s0071.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL022604	0.0	AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBank	AL161587	0.0	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006283076.1	0.0	protein NLP2
Refseq	XP_006283077.1	0.0	protein NLP2
Refseq	XP_023634877.1	0.0	protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	R0GGQ7	0.0	R0GGQ7_9BRAS; Uncharacterized protein
STRING	Cagra.2350s0071.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Cagra.2350s0071.1.p