PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2261s0012.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 529aa    MW: 59183 Da    PI: 4.9892
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2261s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.64.3e-26193247155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Cagra.2261s0012.1.p 193 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 247
                          68****************************************************8 PP
2Response_reg80.26.9e-27131191107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + +
  Cagra.2261s0012.1.p  13 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMK 100
                          89*********************.***************999999**********************5543.7***************** PP

                          HHHTTESEEEESS--HHHH CS
         Response_reg  89 alkaGakdflsKpfdpeel 107
                           ++ Ga d+l Kp+ ++el
  Cagra.2261s0012.1.p 101 GVQHGACDYLLKPIRMKEL 119
                          **************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.5E-1511522IPR017053Response regulator B-type, plant
SuperFamilySSF521721.99E-3510132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.9E-4310134No hitNo description
SMARTSM004485.6E-3211123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.75512127IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.9E-2413120IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.02E-3114127No hitNo description
Gene3DG3DSA:1.10.10.608.3E-28190252IPR009057Homeodomain-like
SuperFamilySSF466893.4E-16191251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-22193247IPR006447Myb domain, plants
PfamPF002492.1E-7195246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEKGGFSPVG LRVLVVDDDP TWLKILEKML KKCSYEVTTC GLAREALRLL RERKDGYDIV  60
ISDVNMPDMD GFKLLEHVGL ELDLPVIMMS VDGETSRVMK GVQHGACDYL LKPIRMKELK  120
IIWQHVLRKK LQEVRDIEGC GYDGGADWIT RYDEAHFLGG GEDVSFGKKR KDFDFEKKLL  180
QDESDPSSSS SKKARVVWSF ELHQKFVNAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS  240
HLQKYRLYLS RLEKEKEIKC YSGGVKSIDS SPKDAEVNSG HQSPGKSSFV FSGGMFQKAT  300
ETDPKPLASA SLSDPNTDVI MPPKTKKTRI GFDPPPISSS AFDSLLPWND ASDVLESKPV  360
LYENSFLQQQ PLPSQSSYVA NSAPSLMEEE MKPPYETPAG GSSVNADEFL MPQDKISTVT  420
IQDLDPSAIS CMKQQEFSSN VTNNTEAILR SLNWELPESH HSASLDTDLD LSWIHGERFL  480
ANTGLQFQDY SSSPSLLSEL PLHLWYGNER LPDPDDYSFM VDHGLFIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17189252163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2261s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0415320.0AB041532.1 Arabidopsis thaliana ARR11 mRNA for response regulator 11, complete cds.
GenBankAK2282160.0AK228216.1 Arabidopsis thaliana mRNA for response regulator 11, complete cds, clone: RAFL14-66-N10.
GenBankBT0087680.0BT008768.1 Arabidopsis thaliana At1g67710 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302128.10.0two-component response regulator ARR11 isoform X1
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLR0GH620.0R0GH62_9BRAS; Two-component response regulator
STRINGCagra.2261s0012.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]