PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2248s0017.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 221aa    MW: 24357.6 Da    PI: 9.6707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2248s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.6e-104493253
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                         +  h  +Er+RR+++ + f+ Lr++lP       ++K   ++ +  Av++Ik+
  Cagra.2248s0017.1.p 44 KLLHRDIERQRRQEMATLFAALRTHLPLqY---IKGKRAVSDHVNGAVNFIKD 93
                         6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-1239113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6174294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-74493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-744110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-74793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDPYQNLNPK GYQRQRPFSS AGEGGSSGGS GLPHDTDDNK KKKKLLHRDI ERQRRQEMAT  60
LFAALRTHLP LQYIKGKRAV SDHVNGAVNF IKDTETRIKE LTARRDELSR GTGQRYLSNS  120
DPAKTGSDLP KPDPATVMVQ PHVSGLEVVV SSSSSGPEAL KLSRVLETLQ EKGLEVISSL  180
TTRVNERLMH TIQVEVNSFG CIDLAWLQEK LVQDLILSTG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2248s0017.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937000.0AB493700.1 Arabidopsis thaliana At4g25410 mRNA for hypothetical protein, partial cds, clone: RAAt4g25410.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285349.11e-161transcription factor bHLH126
SwissprotQ9STJ61e-125BH126_ARATH; Transcription factor bHLH126
TrEMBLR0F8H91e-159R0F8H9_9BRAS; Uncharacterized protein
STRINGCagra.2248s0017.1.p1e-161(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-121bHLH family protein