PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cagra.2248s0016.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 189aa MW: 21271.8 Da PI: 9.5728

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2248s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.7e-13	28	79	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ h+e+E++RR ++ s ++ Lr+llP + ++K s ++ L Av+YI +L+ Cagra.2248s0016.1.p 28 KVVHKEVEKQRRLEMASLYASLRSLLPLEF--IQGKRSTSDQLNGAVNYIEYLE 79 678***********************65..******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.24E-7	24	83	No hit	No description
PROSITE profile	PS50888	12.614	26	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-12	27	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-11	28	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-10	28	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-4	32	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MNGLPEKIRR RPPSKKKLRV SCEEKMEKVV HKEVEKQRRL EMASLYASLR SLLPLEFIQG 60 KRSTSDQLNG AVNYIEYLER NIKDMSSKRD GLVLLSRRSF GSSNEQGCND DSNHVVIRPC 120 LVGVEIMFSH LQTPISSVLQ VLRERGLCVI GCISSSVNDR LIHTLQAEVK DLALIDLADL 180 KVTLTLIK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	19	RPPSKKKLRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2248s0016.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023635067.1	1e-130	transcription factor bHLH118
Swissprot	Q9STJ7	4e-89	BH118_ARATH; Transcription factor bHLH118
TrEMBL	R0GLV3	1e-106	R0GLV3_9BRAS; Uncharacterized protein
STRING	Cagra.2248s0016.1.p	1e-134	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25400.1	8e-75	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.2248s0016.1.p