 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cagra.2213s0001.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
NAC |
| Protein Properties |
Length: 165aa MW: 18639.3 Da PI: 9.9712 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.2213s0001.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 174 | 4.3e-54 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk
Cagra.2213s0001.1.p 16 LPPGFRFHPTDEELVVHYLKKKATSVPLPV-SIIAEIDLYKFDPWELPSKASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDK 104
79****************************.89***************9888999*********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++++ ++++vg+kk Lvfy g+ pkg ktdW+mheyrl
Cagra.2213s0001.1.p 105 PIFTCNSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRL 142
************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 165 aa
Download sequence Send
to blast |
MENMGDSSIG PGHPHLPPGF RFHPTDEELV VHYLKKKATS VPLPVSIIAE IDLYKFDPWE 60
LPSKASFGEH EWYFFSPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL 120
VFYGGKPPKG IKTDWIMHEY RLTDGNLSNT AKPPDIATTR KNSLR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 4e-65 | 16 | 155 | 20 | 158 | NAC domain-containing protein 19 |
| 3swm_B | 4e-65 | 16 | 155 | 20 | 158 | NAC domain-containing protein 19 |
| 3swm_C | 4e-65 | 16 | 155 | 20 | 158 | NAC domain-containing protein 19 |
| 3swm_D | 4e-65 | 16 | 155 | 20 | 158 | NAC domain-containing protein 19 |
| 3swp_A | 4e-65 | 16 | 155 | 20 | 158 | NAC domain-containing protein 19 |
| 3swp_B | 4e-65 | 16 | 155 | 20 | 158 | NAC domain-containing protein 19 |
| 3swp_C | 4e-65 | 16 | 155 | 20 | 158 | NAC domain-containing protein 19 |
| 3swp_D | 4e-65 | 16 | 155 | 20 | 158 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY087839 | 0.0 | AY087839.1 Arabidopsis thaliana clone 38858 mRNA, complete sequence. |
