PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2204s0002.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 328aa MW: 37454.3 Da PI: 4.5695

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2204s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92	9.9e-29	43	174	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikevdiykvePwdLpkkv.kaeekewyfFskrdkkyatgkrknratksgyWk 84 l pG++F P+d el+++yLk+ ++ + + ++v i++v+iy ++P++L + ka+++ w+f ++r kk +gk+++ra ++g W+ Cagra.2204s0002.1.p 43 LVPGLKFVPSDTELINHYLKPYQRDGTyyypQP-FDVpIHHVNIYMSDPQQLSVDFeKANDEAWFFITERYKKGISGKKHKRADNEGHWN 131 579*******************999898444.4666**********95440456778999999999999*********** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 at k++ + vg + L ++ g++p+ +kt+W+mhey+ Cagra.2204s0002.1.p 132 ATVGAKTIDG-VEDGVGDVTALQYFIGEKPHVVKTEWLMHEYSY 174 ****99.7778*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-33	32	194	IPR003441	NAC domain
PROSITE profile	PS51005	34.54	43	194	IPR003441	NAC domain
Pfam	PF02365	7.9E-15	45	173	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MSMPSRNKRK ERSSDFTSSS SSSSSSSSAH DLASSSSTKP NLLVPGLKFV PSDTELINHY 60 LKPYQRDGTY YYPQPFDVPI HHVNIYMSDP QQLSVDFEKA NDEAWFFITE RYKKGISGKK 120 HKRADNEGHW NATVGAKTID GVEDGVGDVT ALQYFIGEKP HVVKTEWLMH EYSYKSPDDD 180 NDKVEYVLCK IYMTPSSVKL MKDEEKALSK AKKGKGKLKE EVKQLEQPKC SLPLTQHHQE 240 QQQPKCSLPP TQHQEQQCLP YDMDDDDFND FDDFFDFVDS DPQPKDVEDF FAEIMETNSL 300 DGDDEDVPKE SDLLEGFFTD EDDKRLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-17	43	199	20	173	NAC domain-containing protein 19
3swm_B	4e-17	43	199	20	173	NAC domain-containing protein 19
3swm_C	4e-17	43	199	20	173	NAC domain-containing protein 19
3swm_D	4e-17	43	199	20	173	NAC domain-containing protein 19
3swp_A	4e-17	43	199	20	173	NAC domain-containing protein 19
3swp_B	4e-17	43	199	20	173	NAC domain-containing protein 19
3swp_C	4e-17	43	199	20	173	NAC domain-containing protein 19
3swp_D	4e-17	43	199	20	173	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2204s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299146.1	1e-174	NAC domain-containing protein 41
TrEMBL	R0HQL1	1e-172	R0HQL1_9BRAS; Uncharacterized protein
STRING	Cagra.2204s0002.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56530.1	7e-51	NAC domain containing protein 64

Link Out ? help Back to Top
Phytozome	Cagra.2204s0002.1.p