PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2197s0042.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 228aa MW: 24553.4 Da PI: 8.0714 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.9 | 1.2e-33 | 49 | 103 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k+rY+eClkNhA+++GghavDGC+Efmps ge+gt +alkCaACgCHRnFHR+e+e Cagra.2197s0042.1.p 49 KMRYRECLKNHAVNIGGHAVDGCCEFMPS-GEDGTLDALKCAACGCHRNFHRKETE 103 789*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-30 | 50 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-26 | 50 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.6E-29 | 51 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.366 | 52 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-32 | 151 | 226 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.17E-20 | 152 | 225 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-27 | 165 | 221 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MNFEEQEEDM EMSGVNPPGG YDSLSGEGAT SSGGGGGGGG GRNKGVGGKM RYRECLKNHA 60 VNIGGHAVDG CCEFMPSGED GTLDALKCAA CGCHRNFHRK ETEIVGGRGQ RVPTYYNRPP 120 QPHPPPGYLH LTSPTAAGQP YRPPMASADE EDTSNPSSSG GNTAKRFRTK FTAEQKEKML 180 AFAERLGWRI QKHDDVAVEQ FCAETGVRRQ VLKIWMHNNK NSLGKKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-38 | 163 | 222 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2197s0042.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF439841 | 0.0 | AF439841.1 Arabidopsis thaliana AT4g24660/F22K18_140 mRNA, complete cds. | |||
GenBank | AL035356 | 0.0 | AL035356.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22K18 (ESSAII project). | |||
GenBank | AL161561 | 0.0 | AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61. | |||
GenBank | AY125563 | 0.0 | AY125563.1 Arabidopsis thaliana AT4g24660/F22K18_140 mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286279.1 | 1e-139 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 1e-126 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | R0FAW7 | 1e-138 | R0FAW7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2197s0042.1.p | 1e-170 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-109 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2197s0042.1.p |
Publications ? help Back to Top | |||
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