 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cagra.2192s0006.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
NAC |
| Protein Properties |
Length: 246aa MW: 27561.8 Da PI: 8.6766 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.2192s0006.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 129.6 | 2.4e-40 | 19 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lp+GfrF Pt+ el+++yL+ ++ g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t+sgyWkat
Cagra.2192s0006.1.p 19 LPVGFRFYPTEVELLTFYLRIQLGGGSATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTRSGYWKAT 108
79****************************999**************9656766667888****************************** PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
g+ +v+s +++++g+kkt+vfy+g+ap+g+kt+W m+ey++
Cagra.2192s0006.1.p 109 GSPGPVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 150
****************************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MCQLQQHTNE MGEDHHHELP VGFRFYPTEV ELLTFYLRIQ LGGGSATIHS LIPILDVFSV 60
EPTQLPNLAG ERCRGDAEQW LFFVPRQERE ARGGRPSRTT RSGYWKATGS PGPVFSPDNR 120
VIGVKKTMVF YTGKAPTGRK TKWKMNEYKA VDETTSVSTN PKSGISRAFD RRPTETYGIE 180
RRVPSNRVES SSRATTSTSL ETSHSGGNKV DLSVNNANTS ITQSISEMVD GLSQPFWEWE 240
QMNWS*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-29 | 19 | 152 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-29 | 19 | 152 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-29 | 19 | 152 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-29 | 19 | 152 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-29 | 19 | 152 | 20 | 147 | NAC domain-containing protein 19 |
| 3swm_B | 1e-29 | 19 | 152 | 20 | 147 | NAC domain-containing protein 19 |
| 3swm_C | 1e-29 | 19 | 152 | 20 | 147 | NAC domain-containing protein 19 |
| 3swm_D | 1e-29 | 19 | 152 | 20 | 147 | NAC domain-containing protein 19 |
| 3swp_A | 1e-29 | 19 | 152 | 20 | 147 | NAC domain-containing protein 19 |
| 3swp_B | 1e-29 | 19 | 152 | 20 | 147 | NAC domain-containing protein 19 |
| 3swp_C | 1e-29 | 19 | 152 | 20 | 147 | NAC domain-containing protein 19 |
| 3swp_D | 1e-29 | 19 | 152 | 20 | 147 | NAC domain-containing protein 19 |
| 3ulx_A | 1e-29 | 19 | 149 | 15 | 139 | Stress-induced transcription factor NAC1 |
| 4dul_A | 1e-29 | 19 | 152 | 17 | 144 | NAC domain-containing protein 19 |
| 4dul_B | 1e-29 | 19 | 152 | 17 | 144 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL138641 | 4e-45 | AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7. |
| GenBank | CP002686 | 4e-45 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
