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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.21346s0001.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
NAC |
| Protein Properties |
Length: 467aa MW: 52169.2 Da PI: 7.1461 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.21346s0001.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 163.3 | 9e-51 | 13 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87
lp+GfrF+Ptdeelv +yL+ k++g+++++ +vi+evdi+k+ePwdLp + vk++++ew fF++ d+ky++g+r nrat +gyWkatg
Cagra.21346s0001.1.p 13 LPVGFRFSPTDEELVRYYLRLKINGHDNDV-RVIREVDICKWEPWDLPdfSVVKTTDSEWLFFCPLDRKYPSGSRMNRATVAGYWKATG 100
79*************************999.99***************6447888999******************************* PP
NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
kd++++s k++ +g+k+tLvfy+grapkg++t W+mheyr+
Cagra.21346s0001.1.p 101 KDRKIKSGKTKIIGVKRTLVFYTGRAPKGTRTCWIMHEYRA 141
*******9999****************************96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0002230 | Biological Process | positive regulation of defense response to virus by host |
| GO:0002237 | Biological Process | response to molecule of bacterial origin |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003713 | Molecular Function | transcription coactivator activity |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MKEDIDVLSL ASLPVGFRFS PTDEELVRYY LRLKINGHDN DVRVIREVDI CKWEPWDLPD 60
FSVVKTTDSE WLFFCPLDRK YPSGSRMNRA TVAGYWKATG KDRKIKSGKT KIIGVKRTLV 120
FYTGRAPKGT RTCWIMHEYR ATEKDLDGTK SGQNPFVICK LFKKQDIVEG DVPEDSKSCE 180
VEPAVSSPTV VDEMKSEVEM SDVSLVFPKT EDTKPSDVAE SSLLVSSECR SENSAAAATT 240
TGLEDIDWLS YMDFDSMDQK LFSPLHSQVQ PELGSSFSGF QSGSSEVFKH HNGDNIQTQY 300
GTNEANEQMN KFLESFSDVP YELPERKELV QQTPEQIPHD PHNILSTCNK INDASETGIK 360
IRTRRAQAPG CAEKFVMQGE ASRRLRLQVH KPEADSTQLQ CIKKQIQVKD TTRGTITKGC 420
GNVTKSKSKT SFIAKKIAAM GYSYKGLVRA SVVALVFVMS VCSVIA*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-47 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-47 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-47 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-47 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 2e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 2e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 2e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 2e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 2e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 2e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 2e-47 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 1e-47 | 3 | 165 | 7 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 1e-47 | 3 | 165 | 7 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}. |
