PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.21284s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SRS
Protein Properties Length: 192aa    MW: 20563.7 Da    PI: 7.8942
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.21284s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702171.15.8e-53112628154
                DUF702  28 CksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavfr 116
                           Cksrg++C+thvkstWvpaakrrerqqql++ ++ +++++ e+ +kr+re+  +++++l +t+++  +++  le+ s+P+evss+avfr
  Cagra.21284s0001.1.p   1 CKSRGLECSTHVKSTWVPAAKRRERQQQLTSGQEPQTQAQGESVPKRQREHFPARSNSLVCTRVAAINTS-GLEIGSFPPEVSSPAVFR 88 
                           ***************************************************************9988755.99**************** PP

                DUF702 117 cvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                           cvrvss+dd+eee+aY+tavsigGhvfkGiLydqG++e
  Cagra.21284s0001.1.p  89 CVRVSSIDDEEEEYAYKTAVSIGGHVFKGILYDQGPAE 126
                           ***********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.0E-471125IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016243.6E-2777124IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
CKSRGLECST HVKSTWVPAA KRRERQQQLT SGQEPQTQAQ GESVPKRQRE HFPARSNSLV  60
CTRVAAINTS GLEIGSFPPE VSSPAVFRCV RVSSIDDEEE EYAYKTAVSI GGHVFKGILY  120
DQGPAERSSS GGGSQPLNLI TAASSSSPNV SCNNGVVGST SDHYIEPASL NYPTPINTFM  180
TGTHFFSNPR S*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.21284s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280764.11e-137protein SHORT INTERNODES
SwissprotQ9XGX01e-111SHI_ARATH; Protein SHORT INTERNODES
TrEMBLR0EWR71e-136R0EWR7_9BRAS; Uncharacterized protein
STRINGCagra.21284s0001.1.p1e-139(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34192864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-113Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]