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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.21284s0001.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
SRS |
Protein Properties |
Length: 192aa MW: 20563.7 Da PI: 7.8942 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.21284s0001.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 171.1 | 5.8e-53 | 1 | 126 | 28 | 154 |
DUF702 28 CksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavfr 116
Cksrg++C+thvkstWvpaakrrerqqql++ ++ +++++ e+ +kr+re+ +++++l +t+++ +++ le+ s+P+evss+avfr
Cagra.21284s0001.1.p 1 CKSRGLECSTHVKSTWVPAAKRRERQQQLTSGQEPQTQAQGESVPKRQREHFPARSNSLVCTRVAAINTS-GLEIGSFPPEVSSPAVFR 88
***************************************************************9988755.99**************** PP
DUF702 117 cvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
cvrvss+dd+eee+aY+tavsigGhvfkGiLydqG++e
Cagra.21284s0001.1.p 89 CVRVSSIDDEEEEYAYKTAVSIGGHVFKGILYDQGPAE 126
***********************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 192 aa
Download sequence Send
to blast |
CKSRGLECST HVKSTWVPAA KRRERQQQLT SGQEPQTQAQ GESVPKRQRE HFPARSNSLV 60 CTRVAAINTS GLEIGSFPPE VSSPAVFRCV RVSSIDDEEE EYAYKTAVSI GGHVFKGILY 120 DQGPAERSSS GGGSQPLNLI TAASSSSPNV SCNNGVVGST SDHYIEPASL NYPTPINTFM 180 TGTHFFSNPR S*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G66350.1 | 1e-113 | Lateral root primordium (LRP) protein-related |
Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]
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