PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2117s0055.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 227aa MW: 25202.4 Da PI: 8.7459 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 51 | 73 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H Cagra.2117s0055.1.p 51 YSCSFCGREFKSAQALGGHMNVH 73 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.1E-6 | 48 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 49 | 75 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.4E-6 | 51 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.154 | 51 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0017 | 51 | 73 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 53 | 73 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MERGECLMSM KLRPVVTKPS SDALSFWPFG EERAVEEYGG GGGCMWPPRS YSCSFCGREF 60 KSAQALGGHM NVHRRDRARL KQQSLSPSST DQATPPEYDR HQQQPQQVLD AGSKVLVQEE 120 SRKPNGTKRE ISTVCNNNVL ENPTKRFEHD NGEVKTDLSV GLLSSEFGPR KKQLFNGSSS 180 SWKRAKTDVS RFPMMLGLVI GVSKINGHHD ELDLELRLGA DPPKVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-12 | 46 | 73 | 2 | 29 | superman protein |
2l1o_A | 3e-12 | 46 | 73 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2117s0055.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB107371 | 0.0 | AB107371.1 Arabidopsis thaliana RBE mRNA for one finger-type zinc finger protein for RABBIT EARS, complete cds. | |||
GenBank | AP002030 | 0.0 | AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4. | |||
GenBank | AY088861 | 0.0 | AY088861.1 Arabidopsis thaliana clone 97505 mRNA, complete sequence. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289430.1 | 1e-165 | probable transcriptional regulator RABBIT EARS | ||||
Swissprot | Q9LHS9 | 1e-145 | RBE_ARATH; Probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | R0HEW6 | 1e-164 | R0HEW6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2117s0055.1.p | 1e-169 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5128 | 25 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 1e-148 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2117s0055.1.p |
Publications ? help Back to Top | |||
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