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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.2117s0038.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
B3 |
Protein Properties |
Length: 235aa MW: 27087.3 Da PI: 9.4313 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.2117s0038.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 110.2 | 9.4e-35 | 45 | 152 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81
f+k ltpsdv+k++rlv+pk++ae++ ++++e+++ l++ede+g+sW+++++y+++s++yvltkGW++Fvk+++L+ gD+v
Cagra.2117s0038.1.p 45 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavadnSSSSEKGMLLSFEDETGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVF 134
99*******************************99777889************************************************* PP
EEE-SSSEE..EEEEE-S CS
B3 82 Fkldgrsefelvvkvfrk 99
F++++++ ++l+++++r+
Cagra.2117s0038.1.p 135 FQRHRSDLRRLFIGWRRR 152
**988799999****997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MSVNHYSTDH HHTLLWQQQH HTTDASETAT TTAAWLNDDL KESLFEKSLT PSDVGKLNRL 60 VIPKQHAEKY FPLNAVADNS SSSEKGMLLS FEDETGKSWR FRYSYWNSSQ SYVLTKGWSR 120 FVKDKQLDPG DVVFFQRHRS DLRRLFIGWR RRGQASSSAV NTSSMAAPSY RQIHHSSTNY 180 SNPPSHSEYS HYGPMKIQKI YLLVDLKLTD LRSMVQWLCK WERDPQPCAI TTSL*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 7e-52 | 41 | 152 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-52 | 41 | 152 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB006700 | 1e-91 | AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15. |
GenBank | CP002688 | 1e-91 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |