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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.21079s0001.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MIKC_MADS |
Protein Properties |
Length: 251aa MW: 28612.2 Da PI: 9.3974 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.21079s0001.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 97.6 | 5.2e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+
Cagra.21079s0001.1.p 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 74
79***********************************************8 PP
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2 | K-box | 114.3 | 1.2e-37 | 96 | 189 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95
s++ea+++++qqe++kL+++i+ +q+ +Rh++Ge+L+sL++keL++Le +Lek+++++RskKne+l+++ie++qk+e +lq++n++Lr
Cagra.21079s0001.1.p 96 PSVTEANTQYYQQEASKLRRQIRDIQNLNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNEMLVAEIEYMQKREMDLQHDNMYLR 184
45899************************************************************************************ PP
K-box 96 kklee 100
+k++e
Cagra.21079s0001.1.p 185 AKIAE 189
**986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 33.305 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-39 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.36E-44 | 18 | 91 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-32 | 18 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-26 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.4E-27 | 101 | 187 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.961 | 103 | 193 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048481 | Biological Process | plant ovule development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MEEGGSSHEA DSSKKIVGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LVIFSTRGRL YEYANNSVRG TIERYKKACS DAVNPPSVTE ANTQYYQQEA SKLRRQIRDI 120 QNLNRHIVGE SLGSLNFKEL KNLEGRLEKG ISRVRSKKNE MLVAEIEYMQ KREMDLQHDN 180 MYLRAKIAEG ARLNPSQQES SVIQGTTVYE SGVSTHHDQS HHYNRNYIPV NLLEPNQQFS 240 AQDQPPLQLV *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1egw_A | 6e-20 | 18 | 85 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 6e-20 | 18 | 85 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 6e-20 | 18 | 85 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 6e-20 | 18 | 85 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1tqe_P | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
3p57_A | 7e-20 | 18 | 85 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_B | 7e-20 | 18 | 85 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_C | 7e-20 | 18 | 85 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_D | 7e-20 | 18 | 85 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_I | 7e-20 | 18 | 85 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3p57_J | 7e-20 | 18 | 85 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6c9l_A | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU551770 | 0.0 | EU551770.1 Capsella bursa-pastoris SHATTERPROOF1a-like protein (SHP1a) mRNA, complete cds. |