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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.2098s0066.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
NAC |
Protein Properties |
Length: 481aa MW: 55711.7 Da PI: 5.5428 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.2098s0066.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 175.9 | 1.1e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgk
Cagra.2098s0066.1.p 6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGK 94
79****************************.99***************6345667999******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
d++v +++++g+kktLv+y+grap+g +t Wvmheyrl
Cagra.2098s0066.1.p 95 DRRVSW-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133
*****9.8899***************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0090602 | Biological Process | sieve element enucleation |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 481 aa
Download sequence Send
to blast |
MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YVHAMPNVSG 180 NGSSSFDNCS DLEISSATHQ VQNTFQPRFG NERFNSNAIS NEDWSQFYGS SYRPFPTPYK 240 VNTEIECSML RHNVSLPPLR VENSAVNDCD FFTSMTHNNV HGVFDDFTFV ASNSNHYNSV 300 GDQVIHVGNY DDQLMTSNHH LNQAGYLEEQ KIIPSLDDTD HQNLGFHGNN TNEDHIDIDD 360 FFSFDIYNEE NVNRIEDNDE QLNTNETLDS SGFEVVEEET RFNNQMLIST YQTTKIQYHQ 420 VVPSHTLKVH VNHNNVEERT LFIEEDKDSW LQRAEKITKT KLTLCSLMAQ QYYKCLAIFF 480 *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-55 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-55 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-55 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |