PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2093s0011.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 346aa    MW: 39216.2 Da    PI: 6.4227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2093s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05177196120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  Cagra.2093s0011.1.p 177 FSCPLCFKTFNRYNNMQMHM 196
                          89*****************9 PP
2zf-C2H213.10.0003261283123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C  Cgk F  k + ++H +++
  Cagra.2093s0011.1.p 261 FACRRCGKAFAVKGDWRTHEKNC 283
                          78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-5177196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66177204IPR007087Zinc finger, C2H2
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-6247281No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5248281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSNPACSNLF NNGCDHDNIN YSTSLSYIYN SHGSFYYPNT TNPSYINHTT TTSTFPNSPP  60
LREALPLLSL SPIRHQEQQD RDYFMDTDQI SSSNFLDDPH VTVDLHLGLP NYGVDESIGS  120
YIAPDATIED QDQDHDQGVE VTVESHLHDD DDHGDQHRGH HYWIPTPSQI LIGPTQFSCP  180
LCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCFCCAPGC KNNIDHPRAK  240
PLKDFRTLQT HYKRKHGSRP FACRRCGKAF AVKGDWRTHE KNCGKLWYCS CGSDFKHKRS  300
LKDHVKAFGN GHVPCGIDSF GGDLEDYYEA ASDIEQQDDS NNNEF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2093s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306545.10.0zinc finger protein WIP5
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLR0IQE20.0R0IQE2_9BRAS; Uncharacterized protein
STRINGCagra.2093s0011.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.10.0WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]