PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2026s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 340aa    MW: 37878.7 Da    PI: 6.4367
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2026s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.72.6e-54211471128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdee++++yLk+kv + ++++  +i ++d++k ePwdLpk++k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdk
  Cagra.2026s0002.1.p  21 LPPGFRFHPTDEEIITHYLKEKVFNIRFTA-AAIGQADLNKNEPWDLPKMAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDK 109
                          79*************************999.78***************9999999*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++ kg lvg+kktLvfy+grapkgekt+Wvmheyrl
  Cagra.2026s0002.1.p 110 EIFRGKGCLVGMKKTLVFYTGRAPKGEKTNWVMHEYRL 147
                          ****9*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6218173IPR003441NAC domain
PROSITE profilePS5100558.12621172IPR003441NAC domain
PfamPF023659.1E-2922147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVEEGCSVVV NQGGDQEVVD LPPGFRFHPT DEEIITHYLK EKVFNIRFTA AAIGQADLNK  60
NEPWDLPKMA KMGEKEFYFF CQRDRKYPTG MRTNRATVSG YWKATGKDKE IFRGKGCLVG  120
MKKTLVFYTG RAPKGEKTNW VMHEYRLDGK YSYHNLPKTA RDEWVVCRVF HKNAPPTTTV  180
IAPNHISRID SLDNIDHFLD FSSLPPLIDP GFLSQPSPSF SGAGHDLKPV LHHPTTALVP  240
TQTLNFPYHS GKNFRSDSGY GAGSDNNNKG MIKLENSLVS GSQETGLSTD VNTTATPEIS  300
SYPLMMNPAA DAALMMDGSK SACDDLDDLI FWDDDFYSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-511917418170NAC domain-containing protein 19
3swm_B4e-511917418170NAC domain-containing protein 19
3swm_C4e-511917418170NAC domain-containing protein 19
3swm_D4e-511917418170NAC domain-containing protein 19
3swp_A4e-511917418170NAC domain-containing protein 19
3swp_B4e-511917418170NAC domain-containing protein 19
3swp_C4e-511917418170NAC domain-containing protein 19
3swp_D4e-511917418170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2026s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0848520.0AY084852.1 Arabidopsis thaliana clone 119460 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298074.10.0NAC domain-containing protein 46
SwissprotQ9SQQ60.0NAC46_ARATH; NAC domain-containing protein 46
TrEMBLR0G5Z50.0R0G5Z5_9BRAS; Uncharacterized protein
STRINGCagra.2026s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.10.0NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]