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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.1968s0112.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
NAC |
| Protein Properties |
Length: 287aa MW: 32609.1 Da PI: 7.4401 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1968s0112.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 167.1 | 5.9e-52 | 6 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++Pw+Lp + +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg dk
Cagra.1968s0112.1.p 6 LPPGFRFHPTDEELVMHYLCRKCASQSIAV-PIIAEIDLYKYDPWELPGLALYGEKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADK 94
79*************************999.88***************6555679*********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++ + vg+kk Lvfy g+apkgekt+W+mheyrl
Cagra.1968s0112.1.p 95 PIGL--PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 130
**99..789***************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009611 | Biological Process | response to wounding |
| GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MSELQLPPGF RFHPTDEELV MHYLCRKCAS QSIAVPIIAE IDLYKYDPWE LPGLALYGEK 60
EWYFFSPRDR KYPNGSRPNR SAGSGYWKAT GADKPIGLPK PVGIKKALVF YAGKAPKGEK 120
TNWIMHEYRL ADVDRSVRKK KNSLRLDDWV LCRIYNKKGA IERRGQPPLP VVTEDIVEEK 180
PKVTEMGMPP PPQQRSEFVY FDTSDSVPKL HTTESSCSEQ VVSPEFTSEV QSELKWKDWS 240
AAVSNNNTLD FGFNYIDATV DNAFGGGGSN QMFPLQDMFM YMPKPY*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF370617 | 0.0 | AF370617.1 Arabidopsis thaliana OsNAC6 protein-like protein (T1N6.12) mRNA, complete cds. |
| GenBank | BT024513 | 0.0 | BT024513.1 Arabidopsis thaliana At1g01720 mRNA, complete cds. |
| GenBank | X74755 | 0.0 | X74755.1 A.thaliana ATAF1 mRNA. |
| Publications
? help Back to Top |
- Florentin A,Damri M,Grafi G
Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization.
Dev. Dyn., 2013. 242(10): p. 1121-33
[PMID:23798027] - Jensen MK, et al.
ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.
FEBS Open Bio, 2013. 3: p. 321-7
[PMID:23951554] - Wang YX
Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress.
Mol. Biol. Rep., 2013. 40(11): p. 6451-8
[PMID:24057250] - Yang X, et al.
Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis.
Plant Cell Rep., 2015. 34(6): p. 943-58
[PMID:25666276] - Du Q,Wang H
The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation.
Plant Signal Behav, 2015. 10(10): p. e1078955
[PMID:26340415] - Takasaki H, et al.
SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
Plant J., 2015. 84(6): p. 1114-23
[PMID:26518251] - Liu Y,Sun J,Wu Y
Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice.
J. Plant Res., 2016. 129(5): p. 955-962
[PMID:27216423] - Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR
Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining.
PLoS ONE, 2016. 11(9): p. e0162327
[PMID:27618630] - Zhao J,Missihoun TD,Bartels D
The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana.
Planta, 2018. 248(4): p. 1017-1027
[PMID:30027414]
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