PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1968s0045.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 470aa    MW: 53728.6 Da    PI: 6.5124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1968s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.61.5e-3751383128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +Gf F+P+deelv +yL+ k++g++  l+ +i+ev+i++++PwdL+ + k+k+ +  wyfFs+r++ky +g+r+ r+t+sg Wk tg++ 
  Cagra.1968s0045.1.p   5 VGFGFRPNDEELVGHYLRDKIQGNTSLLQVAISEVNICSYDPWDLRyQsKYKSMDPMWYFFSRRENKYGNGNRQIRTTRSGKWKLTGESV 94 
                          7************************877667**************85246677777********************************** PP

                  NAM  91 evlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+++         ++g k++L+f ++r p+ +k+dWv+he++ 
  Cagra.1968s0045.1.p  95 DVKDQwgissgFPGKIGHKRVLIFLDARFPDKSKSDWVIHEFHY 138
                          ****97665443345***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.1383159IPR003441NAC domain
SuperFamilySSF1019412.88E-405159IPR003441NAC domain
PfamPF023654.9E-195137IPR003441NAC domain
Gene3DG3DSA:2.30.30.400.001353410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEDKVGFGFR PNDEELVGHY LRDKIQGNTS LLQVAISEVN ICSYDPWDLR YQSKYKSMDP  60
MWYFFSRREN KYGNGNRQIR TTRSGKWKLT GESVDVKDQW GISSGFPGKI GHKRVLIFLD  120
ARFPDKSKSD WVIHEFHYNY DLLPHHPKDT YVICRLEYKG NDKSILTANA TDPTPSFVPN  180
MANSAGSVVN QSRQGNSASY NTYSEHDSAN RGQQFNDNFN MQQLPVQGDL GSSFNHIFEY  240
GSANQGHQFG ANFNMVEGYS ESFNPFPEYD PTNYGQWSSH YSNLQQPVPN ESDFWKPVIE  300
ENFEFLVDER TSKTFMQEHY SDHQPKKPVT GTLPDDSSDN DSMTFGDTSS STDSVGSSNE  360
SYHTPMDDIP SLNTVKALHN YEAQEQPKQL KLQCRSKEKV INTQKSECEW KMAEDSIKRH  420
PSIITKTVKQ RWIVLEKRSQ RNAQSHCLKN MIIGVVLFIS IIGSMILVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-20616218171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1968s0045.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307425.10.0NAC domain-containing protein 1
SwissprotQ0WV960.0NAC1_ARATH; NAC domain-containing protein 1
TrEMBLR0ISI20.0R0ISI2_9BRAS; Uncharacterized protein
STRINGCagra.1968s0045.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.10.0NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]