 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.1968s0044.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
NAC |
| Protein Properties |
Length: 230aa MW: 26314.2 Da PI: 6.1192 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1968s0044.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 95.1 | 1.1e-29 | 5 | 136 | 6 | 127 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
F+P +eel+++yL++k+++k+ + i+ev+i+++eP dLp +k e++ wyf s+ +k + +r++ra +sg Wk tg++++v++
Cagra.1968s0044.1.p 5 TFNPPEEELINYYLNNKITEKDDLDGKQINEVNICHYEPADLPGLAKIESShTWYFISPVEK-FGRLNRTKRASRSGHWKITGNSRTVKD 93
7******************999544477***************6444444426777777665.56789********************** PP
NAM 95 kkgelvglkktLvfy..........kgrapkgektdWvmheyr 127
+g+ +glkk Lvf + ++ + +k++W++he++
Cagra.1968s0044.1.p 94 VDGNPIGLKKFLVFQenkrsstwssSTTNTQQHKANWIIHEFH 136
***************766666555435666778*********9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MVRCTFNPPE EELINYYLNN KITEKDDLDG KQINEVNICH YEPADLPGLA KIESSHTWYF 60
ISPVEKFGRL NRTKRASRSG HWKITGNSRT VKDVDGNPIG LKKFLVFQEN KRSSTWSSST 120
TNTQQHKANW IIHEFHSFLH HPNQVMMGNK NIVEDNGGDY CNDLEELLPE FHTTNWFDYS 180
QFDHFLEGSF INITQPIILE GGESSGLPSG ENGHVYGPNT RENSNVRQL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | ATAC022287 | 1e-103 | AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence. |
| GenBank | CP002686 | 1e-103 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
