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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.1968s0041.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
NAC |
| Protein Properties |
Length: 289aa MW: 33180.4 Da PI: 10.0438 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1968s0041.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 128.3 | 6.1e-40 | 14 | 141 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
+GfrF+Ptdee v++yL++k + + ++++vi+++ i +++Pw+Lp + ++k ++k w fF ++++ky +g+r+ r+tksg+Wk tgk
Cagra.1968s0041.1.p 14 VGFRFRPTDEEFVDDYLRPKNLKLDtSHVDRVISTLTISSFDPWELPsQsRIKLKDKAWCFFNRKENKYDKGERQIRKTKSGFWKITGKP 103
7******************9877773667778**************9525888899********************************** PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
k++++ ++ ++g k++ +fy ++ g+k+dWvmhey+l
Cagra.1968s0041.1.p 104 KDIMR-NRVKIGEKRVVMFYLRKELGGSKSDWVMHEYHL 141
*****.999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MAEALYCQEL ENTVGFRFRP TDEEFVDDYL RPKNLKLDTS HVDRVISTLT ISSFDPWELP 60
SQSRIKLKDK AWCFFNRKEN KYDKGERQIR KTKSGFWKIT GKPKDIMRNR VKIGEKRVVM 120
FYLRKELGGS KSDWVMHEYH LFSPVQMMMT YTICKVMFKG DEKDISSSPA DQNKALQEPR 180
NSTIKLVSLA QEVSFVISLS LRPTNILIIL CASTDNILGI DSKVSQALRT STDTTEVKRM 240
NPCDVARGTE IGEQGQEIII KNKRAGSFLR MIQKFVKKIS QCSPISRT*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-25 | 9 | 144 | 14 | 145 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-25 | 9 | 144 | 14 | 145 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-25 | 9 | 144 | 14 | 145 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-25 | 9 | 144 | 14 | 145 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-25 | 9 | 144 | 17 | 148 | NAC domain-containing protein 19 |
| 3swm_B | 3e-25 | 9 | 144 | 17 | 148 | NAC domain-containing protein 19 |
| 3swm_C | 3e-25 | 9 | 144 | 17 | 148 | NAC domain-containing protein 19 |
| 3swm_D | 3e-25 | 9 | 144 | 17 | 148 | NAC domain-containing protein 19 |
| 3swp_A | 3e-25 | 9 | 144 | 17 | 148 | NAC domain-containing protein 19 |
| 3swp_B | 3e-25 | 9 | 144 | 17 | 148 | NAC domain-containing protein 19 |
| 3swp_C | 3e-25 | 9 | 144 | 17 | 148 | NAC domain-containing protein 19 |
| 3swp_D | 3e-25 | 9 | 144 | 17 | 148 | NAC domain-containing protein 19 |
| 4dul_A | 3e-25 | 9 | 144 | 14 | 145 | NAC domain-containing protein 19 |
| 4dul_B | 3e-25 | 9 | 144 | 14 | 145 | NAC domain-containing protein 19 |
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