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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cagra.1968s0040.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
NAC |
Protein Properties |
Length: 327aa MW: 37143 Da PI: 5.3211 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.1968s0040.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 109.2 | 4.7e-34 | 9 | 138 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
p G+rF Pt+ee+ +yL+ k +e+++ ++++vi++v+i +++Pw+Lp k v++++ wyfF ++ky++g r++r+t+sg+Wk+t
Cagra.1968s0040.1.p 9 PTGVRFCPTEEEIF-YYLRIKnLESNTSHVDQVISTVNISSSDPWHLPpKatiIVETTDLVWYFFGLIETKYNKGVRQSRQTQSGFWKKT 97
89**********99.899877256666888889**************96555544556669***************************** PP
NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
g++ +++ k +ge++g k++L+fy ++g k++W+mhey++
Cagra.1968s0040.1.p 98 GETMDIKPKsgDGEKIGEKRVLMFY---LKSGLKSKWTMHEYHA 138
******998889999**********...688999********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MSLSKLVYPT GVRFCPTEEE IFYYLRIKNL ESNTSHVDQV ISTVNISSSD PWHLPPKATI 60 IVETTDLVWY FFGLIETKYN KGVRQSRQTQ SGFWKKTGET MDIKPKSGDG EKIGEKRVLM 120 FYLKSGLKSK WTMHEYHATI PDQVMTYTLC KVEFKGEKRE IEESRSLYPA PMDNSIIGGL 180 IKNPSKITGS PLDMDALDQV MDNLLNTDFK GLADNDDDQQ SKDVYMEEYN RYEPKKPLTG 240 FIDDSSDSDS TSPTTSSIQT WSTCDSSNQI PTDLQESPTS RIKETPEKKK KTCDDDALVM 300 DKNERAGFFG RMIQKFAKKI QLCSSI*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-19 | 3 | 152 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-19 | 3 | 152 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-19 | 3 | 152 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-19 | 3 | 152 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swm_B | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swm_C | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swm_D | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_A | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_B | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_C | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_D | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
4dul_A | 3e-19 | 3 | 152 | 12 | 162 | NAC domain-containing protein 19 |
4dul_B | 3e-19 | 3 | 152 | 12 | 162 | NAC domain-containing protein 19 |
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