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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1968s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 37143 Da PI: 5.3211 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.2 | 4.7e-34 | 9 | 138 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 p G+rF Pt+ee+ +yL+ k +e+++ ++++vi++v+i +++Pw+Lp k v++++ wyfF ++ky++g r++r+t+sg+Wk+t Cagra.1968s0040.1.p 9 PTGVRFCPTEEEIF-YYLRIKnLESNTSHVDQVISTVNISSSDPWHLPpKatiIVETTDLVWYFFGLIETKYNKGVRQSRQTQSGFWKKT 97 89**********99.899877256666888889**************96555544556669***************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g++ +++ k +ge++g k++L+fy ++g k++W+mhey++ Cagra.1968s0040.1.p 98 GETMDIKPKsgDGEKIGEKRVLMFY---LKSGLKSKWTMHEYHA 138 ******998889999**********...688999********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-37 | 4 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.547 | 8 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-18 | 9 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MSLSKLVYPT GVRFCPTEEE IFYYLRIKNL ESNTSHVDQV ISTVNISSSD PWHLPPKATI 60 IVETTDLVWY FFGLIETKYN KGVRQSRQTQ SGFWKKTGET MDIKPKSGDG EKIGEKRVLM 120 FYLKSGLKSK WTMHEYHATI PDQVMTYTLC KVEFKGEKRE IEESRSLYPA PMDNSIIGGL 180 IKNPSKITGS PLDMDALDQV MDNLLNTDFK GLADNDDDQQ SKDVYMEEYN RYEPKKPLTG 240 FIDDSSDSDS TSPTTSSIQT WSTCDSSNQI PTDLQESPTS RIKETPEKKK KTCDDDALVM 300 DKNERAGFFG RMIQKFAKKI QLCSSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-19 | 3 | 152 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-19 | 3 | 152 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-19 | 3 | 152 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-19 | 3 | 152 | 12 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swm_B | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swm_C | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swm_D | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_A | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_B | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_C | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
3swp_D | 3e-19 | 3 | 152 | 15 | 165 | NAC domain-containing protein 19 |
4dul_A | 3e-19 | 3 | 152 | 12 | 162 | NAC domain-containing protein 19 |
4dul_B | 3e-19 | 3 | 152 | 12 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00123 | DAP | Transfer from AT1G02250 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1968s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305341.1 | 0.0 | NAC domain-containing protein 5 | ||||
Swissprot | O81914 | 2e-99 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | R0I7D2 | 0.0 | R0I7D2_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1968s0040.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 8e-91 | NAC domain containing protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1968s0040.1.p |
Publications ? help Back to Top | |||
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