PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1968s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 382aa    MW: 43630.5 Da    PI: 4.6452
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1968s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.51.2e-2361305128
                  NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka...eekewyfFskrdkkyatgkrknra.....tksgyWka 85 
                          ++F Ptd  lv +yL+++v+++k     +ik+ ++y+ ePw Lp    k+    ek w++F+kr+  + ++   +r+      + g+Wk+
  Cagra.1968s0009.1.p   6 LKFFPTDLKLVEHYLRNRVDTDKD---GFIKDKKLYEQEPWLLPhV--KNdqfVEKGWFYFVKRSCGSDNK-ILRRVpgrggSDGGTWKK 89 
                          69******************9994...45***************42..221236779*****998876553.3344434444779***** PP

                  NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +g+++++l++++ l+g k+ L +yk  ++  + t W+m ey l
  Cagra.1968s0009.1.p  90 SGSKENILDTNNFLIGYKQELSYYKHVKE--KATGWCMTEYWL 130
                          ************************65555..58********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.7972146IPR003441NAC domain
PfamPF023652.1E-155129IPR003441NAC domain
SuperFamilySSF1019413.4E-256146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
VDPSHLKFFP TDLKLVEHYL RNRVDTDKDG FIKDKKLYEQ EPWLLPHVKN DQFVEKGWFY  60
FVKRSCGSDN KILRRVPGRG GSDGGTWKKS GSKENILDTN NFLIGYKQEL SYYKHVKEKA  120
TGWCMTEYWL ASENAAEVFL CNVRVKKNVE DQFQLQTTET NNNIVQQPPL DNNTVSNAFL  180
TGVGGEICDA EAGQQNMDAD DYRFMFDIDQ LDFIYDQQQP PMLPQDSILP LGGQDFRSTV  240
DQDTEVCAEE LGNKLDKKED EDDDRAIQQQ HSHIPLPAQV QDSGKPHVIM EGESVGLGSV  300
TQQREQERMT EEMQSNRYFQ DSYFAGDQQM SPWDNTMTNN NPFGLLFNTL GYETQEPPVA  360
KRANQMSPGF GANCGKRRKQ C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1968s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303713.10.0uncharacterized protein LOC17900305
TrEMBLR0GLG80.0R0GLG8_9BRAS; Uncharacterized protein
STRINGCagra.1968s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2021424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.13e-21NAC domain containing protein 6