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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1968s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 164aa MW: 18973.8 Da PI: 9.9384 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81.5 | 1.7e-25 | 7 | 135 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWka 85 ++F P+d lv++yL++++++ k +ik++++y++ePw Lp+ v++ +ekew++F+kr k+ gk +nr+ g+W + Cagra.1968s0008.1.p 7 LKFFPSDMTLVDQYLRRRIDTGKE---GFIKDIKLYEYEPWLLPH-VNNdlfGEKEWFYFVKRTLKA--GKTPNRKvlgrggSIVGTWTT 90 79*******************994...56***************4.333356899*******99886..667888534444433799*** PP NAM 86 tgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +g+++++l +++ ++g k L +yk + kg +t W+m ey l Cagra.1968s0008.1.p 91 SGSKEAILGRNKVVIGHKAELSYYKDvkGQVKGDSTGWCMTEYWL 135 ************************643378899**********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.921 | 3 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-14 | 6 | 134 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.41E-29 | 6 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MADPRDLKFF PSDMTLVDQY LRRRIDTGKE GFIKDIKLYE YEPWLLPHVN NDLFGEKEWF 60 YFVKRTLKAG KTPNRKVLGR GGSIVGTWTT SGSKEAILGR NKVVIGHKAE LSYYKDVKGQ 120 VKGDSTGWCM TEYWLASKND EFQELVLCYI RGKKKQVKNV SSYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-15 | 1 | 158 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-15 | 1 | 158 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-15 | 1 | 158 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-15 | 1 | 158 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-15 | 1 | 158 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-15 | 1 | 158 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-15 | 1 | 158 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-15 | 1 | 158 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-15 | 1 | 158 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-15 | 1 | 158 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-15 | 1 | 158 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-15 | 1 | 158 | 18 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-15 | 1 | 158 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-15 | 1 | 158 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1968s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303744.2 | 1e-117 | NAC domain-containing protein 19 | ||||
TrEMBL | R0GL05 | 1e-107 | R0GL05_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.1968s0008.1.p | 1e-119 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14544 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03490.1 | 5e-24 | NAC domain containing protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1968s0008.1.p |