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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.1961s0027.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
SRS |
Protein Properties |
Length: 357aa MW: 38989.4 Da PI: 6.355 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.1961s0027.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 228.9 | 9.2e-71 | 116 | 284 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...............aeaaskrkr 76
r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerq+qla++ +k+ ++a + +++
Cagra.1961s0027.1.p 116 RQGNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQAQLASLPAKRIRDAssgggddddgdgdgdD---REDE- 201
7899******************************************************999999888999999987664321...2222. PP
DUF702 77 el.......kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ +++ sal++t++++a+s lets+lP+e+ss avfrc+rvss+dd++ee+aYqtav+igGhvfkGiLydqG+++
Cagra.1961s0027.1.p 202 -KnglgddsNCAGGSALACTRVVNANS-LGLETSHLPPEISSLAVFRCMRVSSIDDEDEEYAYQTAVNIGGHVFKGILYDQGPSD 284
.13456666889999*********986.599***************************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MAGLFYLGGR DHNNKQDHHH HQDKDHNEDK SNNYLYLYKD EIYNNNKGFE IWPPQYFQQH 60 QQNQVAAPTN LYSFGMVPSG GSSNTNNRGT NRSLYFNVVS DHEPVRTSTG GFTVTRQGNM 120 NCQDCGNQAK KDCPHMRCRT CCKSRGFDCQ THVKSTWVPA AKRRERQAQL ASLPAKRIRD 180 ASSGGGDDDD GDGDGDDRED EKNGLGDDSN CAGGSALACT RVVNANSLGL ETSHLPPEIS 240 SLAVFRCMRV SSIDDEDEEY AYQTAVNIGG HVFKGILYDQ GPSDHHRYSS SLNAETSQHH 300 HFNLLDSTAS AAATTTVTVV NNNNGSIDPS SLYTAAAAPF NAFVAAGTPF FAPPRS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC007797 | 0.0 | AC007797.7 Arabidopsis thaliana chromosome I BAC F6F9 genomic sequence, complete sequence. |
GenBank | AC024609 | 0.0 | AC024609.2 Arabidopsis thaliana chromosome I BAC F14P1 genomic sequence, complete sequence. |
GenBank | AY800588 | 0.0 | AY800588.1 Arabidopsis thaliana clone H0000001145 hypothetical protein (AT1G19790) mRNA, complete cds. |
GenBank | AY800589 | 0.0 | AY800589.1 Arabidopsis thaliana clone H0000001146 hypothetical protein (AT1G19790) mRNA, complete cds, alternatively spliced. |
GenBank | AY924676 | 0.0 | AY924676.1 Arabidopsis thaliana hypothetical protein (At1g19790) mRNA, complete cds. |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |