PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

ERF

Protein Properties

Length: 193aa MW: 21515.1 Da PI: 7.1282

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1945s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.5	3.4e-18	7	55	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +++GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + Cagra.1945s0014.1.p 7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55 69****9.******8.....334********************8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.63E-34	6	66	No hit	No description
PROSITE profile	PS51032	20.719	7	64	IPR001471	AP2/ERF domain
Pfam	PF00847	7.1E-11	7	56	IPR001471	AP2/ERF domain
SMART	SM00380	8.1E-41	7	70	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-20	7	66	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.4E-34	7	64	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-10	8	19	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-10	30	46	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR 60 TNFPYNPNAV PTSSSKLLSA TLTAKLHKCY MASLQMTKQT QTQTQTHNSG LRTTETDGDN 120 INGVMASGNQ FNRGGGGGGV KAETTEIKWE DGNMNMEQNF SPLEDDHIEQ MIEELLHYGS 180 IELCSVLPTQ TL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-17	6	64	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00526	DAP	Transfer from AT5G25190	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1945s0014.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY045659	1e-108	AY045659.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds.
GenBank	AY059664	1e-108	AY059664.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006288525.2	1e-125	ethylene-responsive transcription factor ERF003
Swissprot	Q94AW5	1e-104	ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBL	R0HCM4	1e-124	R0HCM4_9BRAS; Uncharacterized protein
STRING	Cagra.1945s0014.1.p	1e-144	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25190.1	2e-80	ERF family protein

Link Out ? help Back to Top
Phytozome	Cagra.1945s0014.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]