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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1914s0035.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 461aa MW: 50124.8 Da PI: 8.5241 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.7 | 9.6e-09 | 138 | 158 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++ + G C++G++C+F H+ Cagra.1914s0035.1.p 138 VCKYWKA-GNCNRGEQCQFLHS 158 7******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-7 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-8 | 133 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.516 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-7 | 134 | 158 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-6 | 136 | 158 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00320 | 2.8E-4 | 164 | 203 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 3.0E-43 | 166 | 454 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 1.56E-43 | 166 | 212 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 12.981 | 171 | 212 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 17.166 | 171 | 375 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF11715 | 3.3E-6 | 186 | 220 | No hit | No description |
PROSITE pattern | PS00678 | 0 | 190 | 204 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 1.0E-6 | 190 | 204 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 58 | 243 | 280 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.56E-43 | 250 | 457 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 6.2E-5 | 288 | 326 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 5.9E-6 | 290 | 326 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 10.809 | 310 | 335 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 313 | 327 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 1.0E-6 | 313 | 327 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 0.0017 | 329 | 366 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.015 | 331 | 365 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 1.0E-6 | 353 | 367 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 470 | 372 | 413 | IPR001680 | WD40 repeat |
SMART | SM00320 | 0.11 | 416 | 453 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MDEATMLDSV VQSSKVGIFS MFSMNYEAPR RYSQGRHYGV KRQQDFAADV VSRGPYGPYD 60 NTMKGPYKRS RNLVWKAPGG NRPKQNEVNG STKPPVLGTR CSVSNQPRKN SVYGPKSSPI 120 SDTRGCGSRD NSSTKKIVCK YWKAGNCNRG EQCQFLHSWS CFPGLAMVAA LEGHTKDIKG 180 ITLPQGSDKL FSVSCDGTLR IWDCHTGQCV HTINLQAEAG SLISEGPWVF LGLQNAVKAF 240 NVQTSKDLHL DGVVGQVHAM TVANGMLFAG TSSGSISVWK ATDSESDPFK YLTSLEGHHS 300 GEVTCFVAGG QLLYSGSVDK TIKVWDLNTL QCITTLKQHT NTVTSLLCWD KCLISSSLDK 360 TINVWACSDN GSLKVTHTRR QQQSVHALCG MHDAEAKPII FCSYQNETVG IFDLPSFEER 420 GKMFSTDTIS TLAVGPDGLL FSGDKSGNLR VWSLAAGTKV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 5e-19 | 159 | 457 | 6 | 322 | Tako8 |
6g6n_A | 5e-19 | 159 | 457 | 6 | 322 | Tako8 |
6g6n_B | 5e-19 | 159 | 457 | 6 | 322 | Tako8 |
6g6n_C | 5e-19 | 159 | 457 | 6 | 322 | Tako8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1914s0035.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285078.1 | 0.0 | zinc finger CCCH domain-containing protein 59 isoform X1 | ||||
Swissprot | Q9FKR9 | 0.0 | C3H59_ARATH; Zinc finger CCCH domain-containing protein 59 | ||||
TrEMBL | R0F8M8 | 0.0 | R0F8M8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1914s0035.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4048 | 18 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40880.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1914s0035.1.p |