PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1914s0022.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 565aa    MW: 65461.6 Da    PI: 8.5051
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1914s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07282346245
                          SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwq 45 
                          +r+T+eEdel+++av ++  +                      +Wk Ia+ ++  Rt  ++ +r +
  Cagra.1914s0022.1.p 282 KRFTKEEDELIKKAVLEYIDNhalgddginmvmeckahpqlkgCWKEIASALP-WRTHDSVYNRAH 346
                          69*****************99********************************.****99999976 PP
2Myb_DNA-binding26.51.5e-08354396146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg WT+e+ el ++  k++G++ W+t a  +g  + +k++k+ w+ 
  Cagra.1914s0022.1.p 354 RGVWTQEDFELVIEFQKKHGND-WRTLADALG--KHRKHVKDAWRR 396
                          899*******************.********8..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.9E-6280351IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-7282348IPR009057Homeodomain-like
PROSITE profilePS500905.03283344IPR017877Myb-like domain
PROSITE profilePS512949.105349402IPR017930Myb domain
SMARTSM007179.0E-4353400IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-6353396IPR009057Homeodomain-like
SuperFamilySSF466897.9E-8354411IPR009057Homeodomain-like
PfamPF139211.2E-9357415No hitNo description
PROSITE profilePS500906.76399467IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-5402468IPR009057Homeodomain-like
SMARTSM0071711403469IPR001005SANT/Myb domain
SuperFamilySSF466891.96E-5447522IPR009057Homeodomain-like
PROSITE profilePS500907.491469522IPR017877Myb-like domain
SMARTSM0071733473524IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
EEALVRKKKS KKQLIDSVAE DGVKKKKKKK KGKRESGSNV VGNSESPKVC EKPLVRSDKR  60
KREDCDLGDE EYKDKEMKRK SKKRKPSVDS AVEKTSLNST NRAKRKIKEK KTSVDPEVEE  120
DNEDSTKHAK KEKQEIVDSE VEDNNLMSST KDARKKSKEK KPSEDSELEE DNKDSKKGAK  180
KIQNVDSEAE EIDLNSAKDA KKKKKKNKQS EVSEAERNNN DSKDAKKKRK KKQECCPSDK  240
EVTTPSNKST KRVTFSDQVE FFPAEDEETG DEEEEVKLTR GKRFTKEEDE LIKKAVLEYI  300
DNHALGDDGI NMVMECKAHP QLKGCWKEIA SALPWRTHDS VYNRAHTIFE EGSRGVWTQE  360
DFELVIEFQK KHGNDWRTLA DALGKHRKHV KDAWRRIRLA SKNKGHWTRQ EYQNLFDLVN  420
KDIRMKAFQE KHAKHGMLKD NIPWMAISDV LGTRDHVTCC NKWYDQLTSP MVAKGTWANV  480
DDYRLLEELL KLDAACIDDV DWDFLLENRD GEACRKRWNQ MVLHIGMPKS KTFAEQVEIL  540
SERYRPDIAP DREDFDNRPY DPED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1628KKKSKKQLIDSVAEDGVKKKKKK
22533KKKKKKGKR
3225231KKKRKKK
4226230KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1914s0022.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100720.0AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankAY5196530.0AY519653.1 Arabidopsis thaliana MYB transcription factor (At5g41020) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282571.10.0cyclin-D-binding Myb-like transcription factor 1
TrEMBLR0GFG20.0R0GFG2_9BRAS; Uncharacterized protein
STRINGCagra.1914s0022.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein