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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1914s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 25187.9 Da PI: 4.2676 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65 | 2.3e-20 | 1 | 112 | 5 | 119 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +rF+P+d e+ v++L kkv g+++++ +v +e+ di++++P+d+p + ++e+++wyf++ + k++ +++ W tg+++evl Cagra.1914s0015.1.p 1 MRFRPSDLEMAVYFLLKKVLGHHMKARTVPQEChDIFSTHPRDFPDNDQEEDEHWYFYCLKTKNKFA----TKS--YNLWIPTGEETEVL 84 69************************99999999***********77778899*******9876532....222..347*********** PP NAM 94 sk..kgelvglkktLvfykgrapkgekt 119 + ++elvg+k++++f ++++++ ek+ Cagra.1914s0015.1.p 85 DPkkNDELVGIKRSFAFIENEDEEEEKS 112 98667778**********8877777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 3.2E-8 | 1 | 133 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.79 | 1 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-24 | 1 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MRFRPSDLEM AVYFLLKKVL GHHMKARTVP QECHDIFSTH PRDFPDNDQE EDEHWYFYCL 60 KTKNKFATKS YNLWIPTGEE TEVLDPKKND ELVGIKRSFA FIENEDEEEE KSENNSLPDE 120 EEEPPRYNWF LDEISLPLTV VDTQWTLCHV FCKNTKPEFV SLPVMESQSE SESQSQSESE 180 SVQSEEKKES VDKPAETLDL GKEKDETVLP PPPPSP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1914s0015.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006284403.1 | 1e-154 | NAC domain-containing protein 104 isoform X1 | ||||
TrEMBL | R0F6W5 | 1e-153 | R0F6W5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1914s0015.1.p | 1e-157 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8604 | 17 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41090.1 | 3e-76 | NAC domain containing protein 95 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1914s0015.1.p |