PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cagra.1914s0015.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 217aa MW: 25187.9 Da PI: 4.2676

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1914s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	65	2.3e-20	1	112	5	119
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +rF+P+d e+ v++L kkv g+++++ +v +e+ di++++P+d+p + ++e+++wyf++ + k++ +++ W tg+++evl Cagra.1914s0015.1.p 1 MRFRPSDLEMAVYFLLKKVLGHHMKARTVPQEChDIFSTHPRDFPDNDQEEDEHWYFYCLKTKNKFA----TKS--YNLWIPTGEETEVL 84 69**********************99999999*******77778899***9876532....222..347******* PP NAM 94 sk..kgelvglkktLvfykgrapkgekt 119 + ++elvg+k++++f ++++++ ek+ Cagra.1914s0015.1.p 85 DPkkNDELVGIKRSFAFIENEDEEEEKS 112 98667778********8877777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02365	3.2E-8	1	133	IPR003441	NAC domain
PROSITE profile	PS51005	25.79	1	153	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-24	1	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MRFRPSDLEM AVYFLLKKVL GHHMKARTVP QECHDIFSTH PRDFPDNDQE EDEHWYFYCL 60 KTKNKFATKS YNLWIPTGEE TEVLDPKKND ELVGIKRSFA FIENEDEEEE KSENNSLPDE 120 EEEPPRYNWF LDEISLPLTV VDTQWTLCHV FCKNTKPEFV SLPVMESQSE SESQSQSESE 180 SVQSEEKKES VDKPAETLDL GKEKDETVLP PPPPSP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1914s0015.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006284403.1	1e-154	NAC domain-containing protein 104 isoform X1
TrEMBL	R0F6W5	1e-153	R0F6W5_9BRAS; Uncharacterized protein
STRING	Cagra.1914s0015.1.p	1e-157	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8604	17	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41090.1	3e-76	NAC domain containing protein 95

Link Out ? help Back to Top
Phytozome	Cagra.1914s0015.1.p