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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1889s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 1656aa MW: 181903 Da PI: 6.7689 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.4 | 1e-10 | 870 | 911 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e+++ + +G++ +k+Ia+++ +t +c+++++k Cagra.1889s0015.1.p 870 PWTSEEKEIFLSMLAIHGKD-FKKIASYLT-EKTTADCIDYYYK 911 8*****************99.********9.9**********98 PP | |||||||
2 | Myb_DNA-binding | 28 | 4.9e-09 | 1085 | 1126 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT +E +++++ ++G++ +++I+r++g +R++ qc+ ++ k+ Cagra.1889s0015.1.p 1085 WTDDERSAFLQGFSLFGKN-FASISRYVG-TRSPDQCRVFFSKV 1126 *****************99.*********.********998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.17E-14 | 853 | 914 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-7 | 862 | 913 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.857 | 866 | 917 | IPR017884 | SANT domain |
SMART | SM00717 | 4.2E-10 | 867 | 915 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-8 | 869 | 911 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.82E-8 | 870 | 912 | No hit | No description |
PROSITE profile | PS51293 | 12.89 | 1080 | 1131 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-8 | 1081 | 1129 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.25E-9 | 1084 | 1131 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-4 | 1084 | 1125 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-7 | 1085 | 1125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.35E-7 | 1085 | 1126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1656 aa Download sequence Send to blast |
MPQDHASWDR KELLRQRKHD RPEQSFDSPF RWRDSPTTPS SHHVPREFSR WGGSGDFRRP 60 SCHGKQGGRH QFVEEGSHGY TSSRSSARIF ENDYYRPSAS RGDWRYTRNC RDDRASVSQK 120 EWKCNTWDMS NGSSRSFERP FGIRNGRRSV DERPLHASDT HTTMVNSLDP TNSAHQPDTE 180 ICTPVRSLRF KNEQKFSDQR LSLPSDPHSD CVRLFEQASS ENNYGNKICS PAKQCNDLMY 240 GRRIANDNSL DPPILNAELE GTWEQLHMKD PQEDNKLHGI TDLDDARKCA KESSLGAIGK 300 LPLWNSSGSF ASQSSGFSHS SSLKSVGAVD STDRKTEVLP KIATVTQSSS GDATPCATTT 360 HLFEEMSSRK KQRLGWGEGL AKYEKKKVDV NTNEDGTTLL ENGLDEQHSL NKNIADKSPT 420 AAILPDYGSP TTPSSVACSS SPGFADKSSA KAAIAASDVS NMCRSPSPVS SIHLERFPVN 480 IDELDNISME RFGCLLNELL CTDEPGTGDS SSVQLTSMNR LLAWKSEILK AVEMTESEID 540 LLENKHRTLK LEGGRHCHVG SSSYFCEGDA DVPKEQEASC ILGPKAAATP VAEALVRSPV 600 HQSSLAKVSV DVCEDNNEEV KFLSQSFATV DSNEDILPKL SMKAVTSSKE ISTPAFVNQE 660 TVELSSADDS MASNEDILCA KLLSSNKKYA CESSGVFNEL LPRDCSFDES RYFGICQMQF 720 DSHVKEKLAD RVELLRAREK ILLLQFKAFQ LSWKKDLDQL ALTKYQSKSS RKSDLYPNAK 780 NGGYLKLPQP VRLRFSSSAP RRDSVVPTTE LVSYMEKLLP GTNLKPYRDI LRMPAMILDE 840 RERVMSRFIS SNGLVEDPCD VEKERTMINP WTSEEKEIFL SMLAIHGKDF KKIASYLTEK 900 TTADCIDYYY KNHKSDCFGK IKKQRAYGKE GKHTYMLAPR KKWKREMGAA SLDILGAVSI 960 IAANAGKVAS TRQISSKRIT LRGCSSSNSL QHDGNNSEGC SYSFDFPRKR TVGADVLAVG 1020 PLSSEQINSC LRTSVSSRER CMDHLKFNPV VKKPRISHTL HNENSNEEDD SCSEESCGET 1080 GPIHWTDDER SAFLQGFSLF GKNFASISRY VGTRSPDQCR VFFSKVRKCL GLEFIQSGSG 1140 NLSTSVSVDN GNEGGGSDLE DPCPMESNSG ICNNGVCAKM DINSPTSPFN MNQNGANHSG 1200 SANVKADLSR SEQENGLTYI HLKDGRNLVS NAYIKGDLPG LVSESCRDLV DINTVENQSQ 1260 AAGISKSSDL LSMEIDEGVL TSVAVSSEPL YCGLSVLSNV IVETPTESSQ MGSGDQGAAT 1320 MLKLNSKNQD GVMQAANRTK NPGLDPESAP SGFKYPECLH HVPIEVCTEN PIGVSVPRGN 1380 PNCHTEAKSG NSLVGQAVET HDLGWQFSKE NLELNGRLQV IGHVNPEQNG QLNSINAESC 1440 QIPQRSVTQD PSRISRSKSD LIVKTQRTGE GFSLNKCTSS APNSLTVSHK EGKSGHSRSH 1500 SFSLSDTERL DKNGDVKLFG TVLTADENGI KQKHNPGGSV RSSSTLSRDH DTRHHYINQQ 1560 HLQNVPITSY GFWDGNRIQT GLTSLPESAK LLASCPEAFS THLKQQVGSN KEIRRDVNGG 1620 GILSFGKHNE DRAEASSAKD GGNIGGVNGV AEAAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 3e-15 | 828 | 918 | 4 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 3e-15 | 828 | 918 | 4 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1889s0015.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290487.1 | 0.0 | uncharacterized protein LOC17885771 | ||||
TrEMBL | R0HEB9 | 0.0 | R0HEB9_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1889s0015.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5260 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 0.0 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1889s0015.1.p |