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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.1838s0033.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
NAC |
| Protein Properties |
Length: 461aa MW: 51158.5 Da PI: 5.5715 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1838s0033.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 163.1 | 1e-50 | 13 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
lp+G+rF+Ptdeel+ +yL+kk++g++ ++ ++i+e+di+k+ePwdLp + +k++++ew fF++ d+ky++g+r+nrat +gyWkatgk
Cagra.1838s0033.1.p 13 LPVGLRFRPTDEELIRYYLRKKINGHDGDV-KAIREIDICKWEPWDLPdfSVIKTKDSEWLFFCPLDRKYPNGSRQNRATVAGYWKATGK 101
799************************999.88***************6448889999******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
d++++++k++ +g+k+tLvf+ grapkg++t+Wv+heyr+
Cagra.1838s0033.1.p 102 DRKIKTSKTNIIGVKRTLVFHAGRAPKGTRTNWVIHEYRA 141
**************************************96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009814 | Biological Process | defense response, incompatible interaction |
| GO:0010200 | Biological Process | response to chitin |
| GO:0070417 | Biological Process | cellular response to cold |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005886 | Cellular Component | plasma membrane |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 461 aa
Download sequence Send
to blast |
MNQNLEVLSM DSLPVGLRFR PTDEELIRYY LRKKINGHDG DVKAIREIDI CKWEPWDLPD 60
FSVIKTKDSE WLFFCPLDRK YPNGSRQNRA TVAGYWKATG KDRKIKTSKT NIIGVKRTLV 120
FHAGRAPKGT RTNWVIHEYR ATENDLSGTN PGQSPFVICK LFKKQELNLA EEDSKSDEAE 180
PAVSSPTVEV SEVTKTEDVK PYDIAESSLV ISGDSHSDAC DEATTAELVD FDWYPELESL 240
DCKLFSPFYS QVQCELGSTF QPGPSNFSGN DTNSFQVQTQ YGTNEENTHI SEFLDSIIQS 300
PDEDPEKHKY VLQSGFDGAT PDQIAPAYPQ GPVVGVSNDV SVTGIKIRSR QAQPSGCTND 360
YIAQGNGPRR LRLQTNLNGS NSKNPDLKAI KREAVDTVDE TMKIGCGKLM RSKNQTGFVF 420
KRITSLKCSY GGLLRAAVVA VVFLMSVCSL TVDFRGSAMP *
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-46 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-46 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-46 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-46 | 3 | 165 | 7 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 1e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 1e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 1e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 1e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 1e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 1e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 1e-46 | 3 | 165 | 10 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 1e-46 | 3 | 165 | 7 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 1e-46 | 3 | 165 | 7 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
