PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1838s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 188aa    MW: 21710.5 Da    PI: 8.7268
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1838s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.2e-1168112549
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                          ++ +rk +NRe+A+rsR++K++ +ee      +L+++N++L ++l
  Cagra.1838s0004.1.p  68 RKKKRKLSNRESAKRSREKKQKHLEEMSIQLNQLKTQNQDLTNQL 112
                          6899************************************99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-1264128IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-965113No hitNo description
PfamPF077162.2E-965112IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.54266112IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.41E-968116No hitNo description
CDDcd147027.43E-1769120No hitNo description
PROSITE patternPS0003607186IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MMSTISPVFS AEPSLATFVP AFETGFTPWD ISHLFSVFDS SSSSLDDPIP SFSTHEVAPT  60
TENITDERKK KRKLSNRESA KRSREKKQKH LEEMSIQLNQ LKTQNQDLTN QLRYVLYHYR  120
RTNTENDRLR LEHRILQDKL LNMRQVLMFR QILERSSANC ATWPCDNNST VVTVQQDPSI  180
ITNHVIV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16673ERKKKRKL
26788RKKKRKLSNRESAKRSREKKQK
36873KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1838s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292387.11e-133basic leucine zipper 4
TrEMBLR0HJ981e-132R0HJ98_9BRAS; Uncharacterized protein
STRINGCagra.1838s0004.1.p1e-137(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.13e-62basic leucine-zipper 5