PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1822s0090.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 457aa    MW: 50072.5 Da    PI: 6.6752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1822s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.6e-053373751255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Cagra.1822s0090.1.p 337 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 375
                          7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.827325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-11335388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-5335379No hitNo description
Gene3DG3DSA:4.10.280.102.0E-8339382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDSANLHQLQ DQLQLVGSSS SSSSLDNNSD PSCYGASSAH QWSPGGISLN SVSLSHNYNN  60
EMLNTRDHNS NNNNTNECMS LSTIHNHSLI QQQDFPLQWP PYHHDQSSYH HHEGLLKIKE  120
ELSSSTISDQ QEGISKFTDM LNSPVITNYL KINEHKDYTE KLLLKTISPG FPTNGDYCSS  180
LPSSSSSSSP SSHRGNFSQI YPSVNISSLS ESRKMSMDMS NNIPRPFDMN MQVFDGRLFE  240
GNVLVPPLNS QEISNLGMSR GSFTPFGLPF HHHLQQTLHH PSSSSPSTHQ MEMLSNMEPQ  300
TSEGKRHNFL MATKSGENAS KKPRVESRSS CPPFKVRKEK LGDRIAALQQ LVSPFGKTDT  360
ASVLMEAIGY IKFLQSQIET LSVPYMRASR NRPGKASQLG SQPQEGDEEE TRDLRSRGLC  420
LVPLSCMSYV TGDGGEGGGG VGSGFWPTPP GFGGGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1822s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0123750.0AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307469.10.0transcription factor bHLH110 isoform X1
SwissprotQ9SFZ30.0BH110_ARATH; Transcription factor bHLH110
TrEMBLR0GWQ10.0R0GWQ1_9BRAS; Uncharacterized protein
STRINGCagra.1822s0090.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]