PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1822s0082.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 26344.3 Da PI: 8.403 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.7e-05 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+Fs+ L H +H Cagra.1822s0082.1.p 93 YKCSVCDKTFSSYQALGGHKASH 115 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.29E-9 | 93 | 115 | No hit | No description |
Pfam | PF13912 | 1.2E-13 | 93 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.003 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.201 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.0E-4 | 93 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.29E-9 | 145 | 172 | No hit | No description |
Pfam | PF13912 | 8.2E-13 | 150 | 174 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 150 | 172 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.162 | 150 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 152 | 172 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MALEALTSPR LASPIPPLFE DSSVFHGVEH WAKGKRSKRS RSDFHHHQNL TEEEYLAFCL 60 MLLARDGDRK HHQTLPPLPA AVMAEKTMEK LSYKCSVCDK TFSSYQALGG HKASHRKNLS 120 QTHSGGGGDD QSTSSATTTS AVTTGSGKSH VCSICHKSFP SGQALGGHKR CHYEGNNNNN 180 NNSSSVSNSE GAGSTSHVSS SHRGFDLNIP PIPEFSTVNG DDEVMSPMPA KKPRFDFPVK 240 LQL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1822s0082.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC012375 | 1e-164 | AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence. | |||
GenBank | AF250336 | 1e-164 | AF250336.1 Arabidopsis thaliana zinc finger protein STZ/ZAT10 (STZ/ZAT10) mRNA, complete cds. | |||
GenBank | AY034998 | 1e-164 | AY034998.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds. | |||
GenBank | AY063006 | 1e-164 | AY063006.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-164 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | X95573 | 1e-164 | X95573.1 A.thaliana mRNA for salt-tolerance zinc finger protein. | |||
GenBank | X98670 | 1e-164 | X98670.1 A.thaliana mRNA for ZAT10 protein. | |||
GenBank | X98671 | 1e-164 | X98671.1 A.thaliana zat10 gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305558.1 | 1e-155 | zinc finger protein ZAT10 | ||||
Swissprot | Q96289 | 1e-135 | ZAT10_ARATH; Zinc finger protein ZAT10 | ||||
TrEMBL | R0GRN8 | 1e-154 | R0GRN8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1822s0082.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-118 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1822s0082.1.p |