PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1822s0047.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 245aa    MW: 27464.7 Da    PI: 4.7008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1822s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-183988255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a+++a+++++g
  Cagra.1822s0047.1.p 39 KYVGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSIRG 88
                         79*******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-283996IPR001471AP2/ERF domain
PROSITE profilePS5103221.2463996IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-213997IPR016177DNA-binding domain
SMARTSM003802.9E-3239102IPR001471AP2/ERF domain
PfamPF008473.3E-133988IPR001471AP2/ERF domain
CDDcd000181.53E-313995No hitNo description
PRINTSPR003676.4E-94051IPR001471AP2/ERF domain
PRINTSPR003676.4E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEINGNSNAG SSSSRSKKSQ RQKQQQSQPQ PQQHNEEIKY VGVRRRPWGR YAAEIRNPTT  60
KERYWLGTFD TAEEAALAYD RAARSIRGLT ARTNFVYSDM PRGSSVTSFI SPDESQRFIS  120
ELFNPPSQQV ALSTNNNNLY ASSNNQSQNA IEFSYNGWPQ ESECGYQSIN SNDEQCDHEL  180
PPLPPSTCFG AELRIPETNS YWNVAHATNM DTFAFELDGF VDQNSIGQSG TEGFDSVSST  240
FFYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1936951171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1822s0047.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210440.0AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBankAC0694710.0AC069471.4 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306281.11e-180ethylene-responsive transcription factor ERF087
SwissprotQ9FZ901e-138ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLR0I9T41e-178R0I9T4_9BRAS; Uncharacterized protein
STRINGCagra.1822s0047.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-116ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]