PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1822s0012.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 310aa    MW: 34828 Da    PI: 7.8089
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1822s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.67.5e-34772171128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                          lp+G++F+P+d+e++  +L++kv+++k      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++ 
  Cagra.1822s0012.1.p  77 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVSt 162
                          799***********9.89*****999956644322..22222333336**********.566677888******************7333 PP

                  NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++vls ++ + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Cagra.1822s0012.1.p 163 deeghETRWHKTGKTRPVLS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 217
                          45444788************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-3668236IPR003441NAC domain
PROSITE profilePS5100532.59677236IPR003441NAC domain
PfamPF023651.2E-1478217IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSWCDGSDDN YDLNLERVSN IDQPSTQLKD QSQSCVTSGP DSKIIVESPV MITCPSCGQK  60
IHHQDDQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRKLHPLID EFIPTLEGEN  120
GICYTHPEKL PGVSKDGQVR HFFHRPSKAY TTGTRKRRKV STDEEGHETR WHKTGKTRPV  180
LSQSGEAGFK KILVLYTNYG RQKKPEKTNW VMHQYHLGKS EDEKDGEPVL SKVFYQTQPR  240
QCGNPTEPKP KNLVNLNRFS YENSQTGFGY EHGGKSTEET SQVIRELVVR EGDGSCSFLR  300
FTCDASKGK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1822s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864760.0AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023646001.10.0NAC domain-containing protein 10
SwissprotF4HY610.0NAC10_ARATH; NAC domain-containing protein 10
TrEMBLR0GQV50.0R0GQV5_9BRAS; Uncharacterized protein
STRINGXP_006305263.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.10.0NAC domain containing protein 10