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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.18121s0004.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MYB |
Protein Properties |
Length: 278aa MW: 32996.8 Da PI: 9.6953 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.18121s0004.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 47 | 5.9e-15 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
r+rW+ eEd ll +v+q+G++ W++++++m+ ++R +k+c +rw +yl
Cagra.18121s0004.1.p 4 RQRWSGEEDALLRAYVRQFGPREWHLVSERMNrpLNRDAKSCLERWKNYL 53
89**********************************************97 PP
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2 | Myb_DNA-binding | 36.9 | 8.4e-12 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w +
Cagra.18121s0004.1.p 59 KGSLTEEEQRLVIRLQEKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
6788******************.*********.*****999999766 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0008356 | Biological Process | asymmetric cell division |
GO:0009615 | Biological Process | response to virus |
GO:0009651 | Biological Process | response to salt stress |
GO:0009733 | Biological Process | response to auxin |
GO:0009739 | Biological Process | response to gibberellin |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis |
GO:0010338 | Biological Process | leaf formation |
GO:0042742 | Biological Process | defense response to bacterium |
GO:0045088 | Biological Process | regulation of innate immune response |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0046686 | Biological Process | response to cadmium ion |
GO:0050832 | Biological Process | defense response to fungus |
GO:0000793 | Cellular Component | condensed chromosome |
GO:0005730 | Cellular Component | nucleolus |
GO:0003677 | Molecular Function | DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNRPLNR DAKSCLERWK NYLKPGIKKG 60 SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE EKESNKRVEP 120 IDESKYDRIL ESFAEKLVKE RGLVLGSMMP SCSGSSEGVF LSELVECCRE LEEGHRAWAD 180 HKKEAAWRLR RLELQLESEK TCRQREKMEE IEAKMKALRE EQKSAMEKIE GEYREQLVGL 240 RRDAEAKDQK LADQWTSKHI RLTKFLEQNM GCRLDRP*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC004684 | 0.0 | AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence. |
GenBank | AF175996 | 0.0 | AF175996.1 Arabidopsis thaliana putative transcription factor (MYB91) mRNA, complete cds. |
GenBank | AY519578 | 0.0 | AY519578.1 Arabidopsis thaliana MYB transcription factor (At2g37630) mRNA, complete cds. |
GenBank | BT026027 | 0.0 | BT026027.1 Arabidopsis thaliana At2g37630 mRNA, complete cds. |
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |