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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1809s0003.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | AP2 | ||||||||
Protein Properties | Length: 460aa MW: 50572.6 Da PI: 7.0054 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.7e-17 | 156 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cagra.1809s0003.2.p 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-9 | 156 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-15 | 156 | 213 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-17 | 157 | 213 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-32 | 157 | 219 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.09E-10 | 157 | 212 | No hit | No description |
PROSITE profile | PS51032 | 17.82 | 157 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-6 | 248 | 293 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-10 | 249 | 297 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MLDLNLDADS PESTQYGDSY LDRQTSDGSA GNRLEESGTS TSSVINADGD EDSCSTRAFT 60 LSFDILKVGS SSGGDESPAS ASAAGVTKEF FPVSGDCGHL RDFEGSSSRS WIDLSFDRNG 120 DGETKLMAPV QVPVPTPAPV PAQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFTLGDYEED MKQVQNLSKE EFVHILRRQS 240 TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKAYDKAAIN TNGREAVTNF EMSSYQNEIN 300 SENNNEGGHD KLDLNLGMSL SPGNAPKQNG RLFHFPSNTY ETQRGVSLRM DNEFMGKPVN 360 TPIPYGSSDH RVYWNGACPS YNNPVEGRAT EKRSEAEVMM SNWGWQRQGQ TSTVRQQPPG 420 PQPPPPPLFS VAAASSGFSH FRPQPPNDNA ARGYFYPQP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1809s0003.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF325074 | 0.0 | AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. | |||
GenBank | AY050815 | 0.0 | AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. | |||
GenBank | AY091418 | 0.0 | AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023640277.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | Q9SK03 | 0.0 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | R0HUN3 | 0.0 | R0HUN3_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.27991s0069.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 0.0 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1809s0003.2.p |