|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cagra.1809s0003.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
Family |
AP2 |
Protein Properties |
Length: 475aa MW: 52300.5 Da PI: 6.609 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.1809s0003.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.5 | 5.9e-17 | 156 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Cagra.1809s0003.1.p 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205
78*******************......55************************997 PP
|
2 | AP2 | 40.6 | 6.3e-13 | 248 | 297 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ + +
Cagra.1809s0003.1.p 248 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAINTN 297
89********.7******5553..2.26**********99*********98765 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 475 aa
Download sequence Send
to blast |
MLDLNLDADS PESTQYGDSY LDRQTSDGSA GNRLEESGTS TSSVINADGD EDSCSTRAFT 60 LSFDILKVGS SSGGDESPAS ASAAGVTKEF FPVSGDCGHL RDFEGSSSRS WIDLSFDRNG 120 DGETKLMAPV QVPVPTPAPV PAQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFTLGDYEED MKQVQNLSKE EFVHILRRQS 240 TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAINTNGRE 300 AVTNFEMSSY QNEINSENNN EGGHDKLDLN LGMSLSPGNA PKQNGRLFHF PSNTYETQRG 360 VSLRMDNEFM GKPVNTPIPY GSSDHRVYWN GACPSYNNPV EGRATEKRSE AEVMMSNWGW 420 QRQGQTSTVR QQPPGPQPPP PPLFSVAAAS SGFSHFRPQP PNDNAARGYF YPQP*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AF325074 | 0.0 | AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
GenBank | AY050815 | 0.0 | AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
GenBank | AY091418 | 0.0 | AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |