PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

GATA

Protein Properties

Length: 324aa MW: 35740.7 Da PI: 6.711

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1742s0041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.4	3.9e-18	232	265	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +tkTp+WR gp g+ktLCnaCG++y++ + Cagra.1742s0041.1.p 232 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 265 99*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	3.2E-94	1	322	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	11.728	226	262	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.0E-16	226	276	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.4E-14	230	263	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.05E-14	230	289	No hit	No description
CDD	cd00202	6.70E-15	231	278	No hit	No description
Pfam	PF00320	4.2E-16	232	265	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	232	257	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009845	Biological Process	seed germination
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MIGQSFPEDL DCGNFFDNMD DLMDFPGGDI DVGFGIGDSD AFPTIWTTQH DTWPAASDPL 60 FSSNTNSNSS TELYVPFEDI VKVDRPPSFV EESLVEKKEE SFSTNTDSSS SHSQFRSSSP 120 VSVLESSSSS SQTTNTTSLV LPGKHGRPRT KRPRPPVQEK DRAKDNVCGA DSRLIIRIPK 180 QFLSDHNKMI NKKKKKKAKV TSSSSSSGID LEVNGNNVDS YSSEQQHPVR KCMHCEVTKT 240 PQWRLGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFTP ALHSNSHKKV AEMRSKRCSD 300 GSYMTEENDL QELIPNNAFI GVD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	154	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1742s0041.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF412107	0.0	AF412107.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
GenBank	AK317503	0.0	AK317503.1 Arabidopsis thaliana AT3G54810 mRNA, complete cds, clone: RAFL23-14-K23.
GenBank	AY078029	0.0	AY078029.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291493.1	0.0	GATA transcription factor 8
Swissprot	Q9SV30	0.0	GATA8_ARATH; GATA transcription factor 8
TrEMBL	R0FQH6	0.0	R0FQH6_9BRAS; GATA transcription factor
STRING	Cagra.1742s0041.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4975	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	1e-128	GATA family protein

Link Out ? help Back to Top
Phytozome	Cagra.1742s0041.1.p

Publications ? help Back to Top
Choi D, et al. iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis. Mol Plant, 2014. 7(5): p. 792-813 [PMID:24380880] Li T,Wu XY,Li H,Song JH,Liu JY A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network. Mol Plant, 2016. 9(5): p. 650-661 [PMID:26961720]