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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.1725s0068.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
C2H2 |
| Protein Properties |
Length: 224aa MW: 24902.3 Da PI: 10.4764 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1725s0068.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.8 | 0.00017 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
Cagra.1725s0068.1.p 65 FSCNYCQRKFYSSQALGGHQNAH 87
89******************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MDPSIKGEKE MLKMKKQGHQ DLELGLTLSP RGTTSAELNL IDSFKTTSSS TSHHQQEHLA 60
DPRVFSCNYC QRKFYSSQAL GGHQNAHKRE RTLAKRGQYY KMTFSSSPSS AFAFGHGSVV 120
SRFASMASLP LHGSANNRST LGIQAHSTIH KPLLGRQTTS LSHVFHKKPT IGMMLPDKFH 180
LEVVAGGSNR DVIAANLERI EQFKNNQEDH NQFKKKIDLT LKL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | ATHZFPA | 0.0 | L39644.1 Arabidopsis thaliana zinc finger protein 1 (ZFP1) mRNA, complete cds. |
| GenBank | ATU53501 | 0.0 | U53501.1 Arabidopsis thaliana chromosome I cosmid g8261 DNA (cytosine-5-) methyltransferase, zinc finger protein 1, nucleoporin 98, poly A+ RNA export protein, plasma membrane ATPase 2, and serine/threonine protein kinase genes, complete cds. |
| GenBank | BT026406 | 0.0 | BT026406.1 Arabidopsis thaliana At1g80730 mRNA, complete cds. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | F23A5 | 0.0 | AC011713.2 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence. |
