PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MIKC_MADS

Protein Properties

Length: 327aa MW: 37016.4 Da PI: 4.8542

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1707s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.3	3.6e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l +s Cagra.1707s0007.1.p 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSDRLSLFS 58 79******************************************998776 PP
2	K-box	14.2	1.8e-06	110	177	9	76
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 + +++ e+l++e+ +L++++++ ++e++++ + + s+++ + e+qL + l+++ +++++ll ++ Cagra.1707s0007.1.p 110 TINSDVEELEREVCRLQQQLQMAEEELKRYEPDPVRFTSMEDYEVCEKQLLDTLSHVLQRRDHLLSSH 177 5678899********************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.156	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.69E-34	2	75	No hit	No description
SuperFamily	SSF55455	4.97E-29	2	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-24	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SDRLSLFSGK 60 TRIEDVFTRF INLPKQERER DIQSKECLLR ILQQLKTEND IALQHTNPTT INSDVEELER 120 EVCRLQQQLQ MAEEELKRYE PDPVRFTSME DYEVCEKQLL DTLSHVLQRR DHLLSSHHLS 180 SYDAASTMQQ SIAGPFVNDV VEGWLPESAH NQSHLFDASA HSNQLRELSS AMYEPLLQGS 240 SSSSNQNNMS ECHVTSHNGE MFPEWAQAYS SSALFASMQQ QHGGVVPSIE EMMPAQQGDI 300 PAVTTAAQAD PEISDYETKV PQLSSQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	8e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	8e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	8e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	8e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1707s0007.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056457	0.0	DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006303516.1	0.0	agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	0.0	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	R0I2E6	0.0	R0I2E6_9BRAS; Uncharacterized protein
STRING	Cagra.1707s0007.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2179	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	0.0	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Cagra.1707s0007.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]