 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cagra.1681s0033.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
Family |
M-type_MADS |
Protein Properties |
Length: 410aa MW: 45623.2 Da PI: 9.588 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.1681s0033.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 70.2 | 1.8e-22 | 40 | 89 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+++++s + +++ kR+++++KKA ELSvLC++ev+vi ++ +g+l+++++
Cagra.1681s0033.1.p 40 SSSSSSSKATSLKKRQETVFKKAGELSVLCGIEVCVICYGADGELKTWPK 89
78999*******************************************96 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MVSFSSCSPS YSSSEKKKTT MSIPQIQQTL FKKPSYASSS SSSSSSKATS LKKRQETVFK 60 KAGELSVLCG IEVCVICYGA DGELKTWPKE REKVKAIAQR YAALSETKRR KGSVDLHEFL 120 EKINNDDSQK KTKKKKVRRV PKVKYPVWDP RFDNYSVEQL TGLIQSLERN LTRIQHRVRA 180 VVEGQGQRKI QYLSMANQGP MLPSTMNQYL QQQPNQVSMF LFNHGNGNIS QIPVSASALN 240 QGQSLAPVPP ELMIYPNLDV GNYSGSLGVQ GTGISGFQNM NMNMLAYNNI NSFDGFSKQI 300 DQNSKVESYS SLLGAGIDEL EDTNMYNHNN FNTGDYSGLL GTQGIVTNGL NMSMHDYNNN 360 NNNNNNSVNA NGLSHQFGQF QTQQQQGAFN WDQPGNNFRP LYDLPQPLL*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |