PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

M-type_MADS

Protein Properties

Length: 410aa MW: 45623.2 Da PI: 9.588

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1681s0033.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.2	1.8e-22	40	89	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s + +++ kR+++++KKA ELSvLC++ev+vi ++ +g+l+++++ Cagra.1681s0033.1.p 40 SSSSSSSKATSLKKRQETVFKKAGELSVLCGIEVCVICYGADGELKTWPK 89 78999*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.0E-6	14	90	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.563	43	91	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-14	43	87	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-17	44	122	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.34E-19	47	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MVSFSSCSPS YSSSEKKKTT MSIPQIQQTL FKKPSYASSS SSSSSSKATS LKKRQETVFK 60 KAGELSVLCG IEVCVICYGA DGELKTWPKE REKVKAIAQR YAALSETKRR KGSVDLHEFL 120 EKINNDDSQK KTKKKKVRRV PKVKYPVWDP RFDNYSVEQL TGLIQSLERN LTRIQHRVRA 180 VVEGQGQRKI QYLSMANQGP MLPSTMNQYL QQQPNQVSMF LFNHGNGNIS QIPVSASALN 240 QGQSLAPVPP ELMIYPNLDV GNYSGSLGVQ GTGISGFQNM NMNMLAYNNI NSFDGFSKQI 300 DQNSKVESYS SLLGAGIDEL EDTNMYNHNN FNTGDYSGLL GTQGIVTNGL NMSMHDYNNN 360 NNNNNNSVNA NGLSHQFGQF QTQQQQGAFN WDQPGNNFRP LYDLPQPLL*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MVSFSSCSPS YSSSEKKKTT MSIPQIQQTL FKKPSYASSS SSSSSSKATS LKKRQETVFK  60
KAGELSVLCG IEVCVICYGA DGELKTWPKE REKVKAIAQR YAALSETKRR KGSVDLHEFL  120
EKINNDDSQK KTKKKKVRRV PKVKYPVWDP RFDNYSVEQL TGLIQSLERN LTRIQHRVRA  180
VVEGQGQRKI QYLSMANQGP MLPSTMNQYL QQQPNQVSMF LFNHGNGNIS QIPVSASALN  240
QGQSLAPVPP ELMIYPNLDV GNYSGSLGVQ GTGISGFQNM NMNMLAYNNI NSFDGFSKQI  300
DQNSKVESYS SLLGAGIDEL EDTNMYNHNN FNTGDYSGLL GTQGIVTNGL NMSMHDYNNN  360
NNNNNNSVNA NGLSHQFGQF QTQQQQGAFN WDQPGNNFRP LYDLPQPLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1681s0033.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299790.2	0.0	agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	1e-173	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	R0I855	0.0	R0I855_9BRAS; Uncharacterized protein
STRING	Cagra.1681s0033.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	1e-155	AGAMOUS-like 103

Link Out ? help Back to Top
Phytozome	Cagra.1681s0033.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]