PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1681s0032.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 651aa MW: 72445.8 Da PI: 9.5357 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 7.8e-06 | 231 | 250 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ f++ G+C+ G+ C+F+H Cagra.1681s0032.1.p 231 PCK-FLAAGFCRNGNYCRFSH 250 799.6666************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.061 | 226 | 253 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MSGLGRTHVS NWDSKEDSHH HHSSLTASSG AFYRDKESEP VRFNSESNGS RRSGAETNQH 60 PGEARSRSIV SQSNDNSYDS ERDDTRQQIF PRNGSRSNSM SRSRSRSPVY RGKHKTRTLV 120 SPTPIREFNK RGSGHHFDQS NDYGLEDDTR KPRKTKYHTD DFRGEAMMTG ARFSVYNTKF 180 PEDNSRREHL HDNGFSDPRL KRHRSEFTGV KDTQRRNGDG EGQFHRTSNI PCKFLAAGFC 240 RNGNYCRFSH HGAGRKQPQD KHFYRQDSNN NNKWNDVERL DNGRLGGIEV SRASKGVSEP 300 NRNSSSWIDD MEMSPDWNYG VQSLKNPVKE EHSVGIIGQS SQSQVLKGDL VSHYDQRSSQ 360 SYSHPVNVTP VQGFSQKHNV LPCQSSLTAG GSQQVLATAA ADLSVGSNLS NVESGKVYQN 420 NHQSTVERPV LVQNTVSKEQ LDKITSISAT IAQFLANGDP IPELVKALQM PLHSESSMDI 480 QPNQATTTVH SQSNVMSSNP NQLCGLGVNI GAGGVPVVTA SQVNNVSGIQ DLTLNPKGCE 540 ENRNKKTHES SKEEEGKKTG EDTNDPKEMR AFKFALVEVV KELLNPTWKE GKMDKDGYKN 600 IVKKVVEKVT VTMQSGSVPQ TQENIDHYLS ASKPKLTKLV EAYISKIKKT * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1681s0032.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175797 | 2e-83 | AK175797.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-38-N23. | |||
GenBank | AK221759 | 2e-83 | AK221759.1 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL21-60-F07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641197.1 | 0.0 | zinc finger CCCH domain-containing protein 38 | ||||
Swissprot | Q9LIH5 | 0.0 | C3H38_ARATH; Zinc finger CCCH domain-containing protein 38 | ||||
TrEMBL | R0G3V2 | 0.0 | R0G3V2_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1681s0032.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9160 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-12 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1681s0032.1.p |