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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.1681s0009.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
NAC |
| Protein Properties |
Length: 312aa MW: 35260.3 Da PI: 6.5258 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.1681s0009.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 181.2 | 2.6e-56 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdeel+++yL++kv+++ ++ +++ +vd++k+ePwdLp+k++ +ekewyfFs+rd+ky+tg r+nrat++gyWk+tgkdk
Cagra.1681s0009.1.p 5 LPPGFRFHPTDEELITHYLCRKVSDTGFTG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFSQRDRKYPTGLRTNRATEAGYWKTTGKDK 93
79*************************999.88***************999999************************************ PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
e+++ +g lvg+kktLvfykgrapkgek++Wvmheyrle
Cagra.1681s0009.1.p 94 EIYR-SGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
****.999*****************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MEDNLPPGFR FHPTDEELIT HYLCRKVSDT GFTGKAVVDV DLNKCEPWDL PAKASMGEKE 60
WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV LVGMKKTLVF YKGRAPKGEK 120
SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF EKSTATKKAQ EQQPQSSQPS FGSPCDANSS 180
MANEFEDIEL PNLNSNSSTI DYNNQIHQYN SQRNVYSEDN TTSTAGLNMA STNIPSWTTS 240
LLGPPLSPIN SLLLKAFQIR NTYGFQKEMI PNFNPSPLQQ GVVSNIMQNG SSSSQAQAQP 300
QEEAFNMDSI W*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 8e-60 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 8e-60 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 8e-60 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 8e-60 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 9e-60 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 9e-60 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 9e-60 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 9e-60 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 9e-60 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 9e-60 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 9e-60 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 9e-60 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 8e-60 | 4 | 158 | 16 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 8e-60 | 4 | 158 | 16 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB026658 | 1e-156 | AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24. |
| GenBank | CP002686 | 1e-156 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
