PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1681s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HB-other
Protein Properties Length: 350aa    MW: 38724 Da    PI: 8.5917
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1681s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.56e-0557743855
                         TS-HHHHHHHHHHHHHHH CS
             Homeobox 38 gLterqVkvWFqNrRake 55
                          ++ +q+ +WFqNrR+  
  Cagra.1681s0007.1.p 57 VVQFKQIWNWFQNRRYAL 74
                         56779**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0052781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-51879IPR009057Homeodomain-like
SuperFamilySSF466892.1E-81978IPR009057Homeodomain-like
PfamPF167192.9E-41142270IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFILSEVT EMEAILLQHN TAMPGRHILE ALADKFSESP ERKGKIVVQF  60
KQIWNWFQNR RYALRARGNK APGKLNVSSM PRMDLPNQMR NVIQPLAAPK TTHMTGNLPG  120
MTPAPSGILV PGVMRSGSDN SYLEFEAKSA RDGAWYDVQA FLAHRNLEIG DPEVQVRFAG  180
FEVEEDEWIN VKKHVRQRSL PCEASECVAV LAGDLVLCFQ EGKDQALYFD AIVLDAQRRR  240
HDVRGCRCRF LVRYSHDQSE QEIVPLRKIC RRPETDYRLQ QLHSAVNDLA NLNQHQIPAL  300
DAAAKTSLSH SGTSVPIVTP EPKDRSLSAT PATSVQPSSN AAAVPAGSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A5e-451432744134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-451432744134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-451432744134SHH1 SAWADEE
4iur_B5e-451432744134SHH1 SAWADEE
4iut_A5e-451432744134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-451432744134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-451432744134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-451432744134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-451432744134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-451432744134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1681s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930420.0AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034280.0BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641868.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLR0G6A60.0R0G6A6_9BRAS; Uncharacterized protein
STRINGCagra.1681s0007.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.20.0sequence-specific DNA binding transcription factors;sequence-specific DNA binding