PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

ERF

Protein Properties

Length: 202aa MW: 21871.1 Da PI: 3.7735

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.16778s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.1	2.4e-19	1	49	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+W+AeIrdp+ r r++lg+++taeeAa +++a+ +l+g Cagra.16778s0005.1.p 1 FRGVRQRP-WGKWAAEIRDPT----RrVRVWLGTYDTAEEAAVVYDNAAIQLRG 49 79****.******84....34***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.8E-37	1	63	IPR001471	AP2/ERF domain
Pfam	PF00847	3.7E-12	1	49	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-30	1	57	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.82E-22	1	57	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.039	1	57	IPR001471	AP2/ERF domain
CDD	cd00018	1.55E-32	1	56	No hit	No description
PRINTS	PR00367	1.4E-10	1	12	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	23	39	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
FRGVRQRPWG KWAAEIRDPT RRVRVWLGTY DTAEEAAVVY DNAAIQLRGP NALLNFPPPP 60 PPPVEEEAEE TSDFISNGGG GCLASPVSVL QSPFSGESTA VEEEFEFPGV SPMVEVKEEP 120 LSTVPGTYTD FSESLFSVDE FFGFPTSMTD CFGGDLFGED LFTDMSFGSG FGFGSGFSSW 180 HVEDHFQDIG DLFGSDPLLA V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-23	1	57	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.16778s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL049876	2e-49	AL049876.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project).
GenBank	AL161531	2e-49	AL161531.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31.
GenBank	AY560849	2e-49	AY560849.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g11140) mRNA, complete cds.
GenBank	BT025176	2e-49	BT025176.1 Arabidopsis thaliana At4g11140 mRNA, complete cds.
GenBank	CP002687	2e-49	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	F2P3	2e-49	AF080120.1 Arabidopsis thaliana BAC F2P3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006288279.1	1e-114	ethylene-responsive transcription factor CRF1
Swissprot	O82503	3e-81	CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBL	R0FFZ1	1e-113	R0FFZ1_9BRAS; Uncharacterized protein
STRING	Cagra.16778s0005.1.p	1e-142	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11140.1	6e-78	cytokinin response factor 1

Link Out ? help Back to Top
Phytozome	Cagra.16778s0005.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]